| Protein Id: YP_009755897.1 |
Length: 1184 aa |
| Description: spike protein Canada goose coronavirus. |
Molecule type: linear |
| Data category: VRL |
Date: 12-Apr-20 |
| Source: Canada goose coronavirus |
| Class virus: Coronaviridae |
Virus name: Canada goose coronavirus |
| Host: Branta canadensis |
Authors: Papineau;A.; Berhane;Y.; Wylie;T.N.; Wylie;K.M.; Sharpe;S. and Lung;O. |
| Title: Genome Organization of Canada Goose Coronavirus; A Novel Species Identified in a Mass Die-off of Canada Geese |
Journal: Sci Rep 9 (1); 5954 (2019) |
| Taxonomy: Canada goose coronavirus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; unclassified Gammacoronavirus. |
| db_xref: """taxon:2569586, GeneID:54124778""" |
| Sequence: MKALFKTFTFFSLLVCLSCQIYGDDWVYYYPSAFRPSDGWHLQSGAYQVVEQSTLNSTSGAGCTFAHNSFNLTMSDGVVLQALPPTGWTDQAAKTYVHLAGCSMGPYIFFVFGPCNNNKVCGRPGIKGGISFIVYDTNYTIIYQTDFPNWTAHTKFSTLQCVGHKGSVYLNGDLLYQLGYDATVTNASLVTCTTPSVQYLYKSSRAINSLVYFQNGTAQDLILCDDTPRGVLYCTYGNGNLTDGLYPISALSTPNKTLEVYLIGSVVNNTYLGVLTNYTFYNQSDVDTITIGTHGDQMAQLAKLKLYQEFSASEPYYNFNFTFLKEFEFIPNGKAISLTANYGSIYSSCGFTLDNFNNGHCFNSLSIKLTYAPKYWGCKEAMSYFQAQCCYMYSYDTSSKCYGIAKDTEDYKYECVLLVLVFMQQGSKICTSPTPPVLVEQNVLNNTFVLDQCVNYTIYGHYGYGYIINITDSVSPGTMLADGGLLVQDSSGAIDVFAVDNVYGRQYYKVNLCNDVNEQYVLTGSVVTGKLTSFNCTGCPLLSNQYYQLFSNNTRRKRSLDSQVNVTSCDYVTFGEYCLFPDGTYKYIQSATFDTLFEPLLNVTENILIPDSFNLTVTEEFIQTQMQQIQLNCLQYVCGASVQCRNLFKQYGSVCDNIVSILNGVAQSESQQLISMYSSTLPGQDFNPVYANMSTGGFNLSVLLPTTPQSRSFIEDLLFDKVESVGLPTDQAYLDCMRGWTARDLICAQYYNGIMVLPPIITPAMQVMYTGSFIASMAWGGLTAAGAIPFATQIQARINHLGITQTLLIDNQKMLAESFNNAVKYMQQGFEATSSALQQIQDVVNQQGAVLQEVLNSLNKNFGAVSSVIQDIYKSLDELSANAQMDRLITGRLSALSVLASSKQADQLRVQQQRQLAQDKLNECVLSQSTRNSFCGSGKHVMTIPQTAPNGILFVHFTYTPQTFKNVTAVVGFCVRGNTTDSSYEYALVPVNGRGVFIEINGTYYITSRDMYMPRNITAGDVVTLTSCQANYVYVNRTVVTTFVDDSDFDFDAEFDKWWNETQHDFPQLDEFNYTIPLLNITQQIQDIQDAIQGLNDSYVDLHELSKLTTYIKWPWYIWLAIAFLTIIFFLILGWIFFMTGCCGGCCGCCGLIPLAQRCSKKSSYYQTFDDDVVGERIRPKKNV |
Nucleotide
| Nucleotide_Id: NC_046965.1 |
Length: 3555bp |
| Description: Canada goose coronavirus strain Cambridge_Bay_2017; complete genome |
Source: Canada goose coronavirus |
| Nucleotide_type: RNA |
Molecule type: linear |
| Data category: VRL |
Date: 12-Apr-20 |
| Class virus: Coronaviridae |
Virus name: Canada goose coronavirus |
| CDS: NC_046965.1:20069..23623 |
Host: Branta canadensis |
| Authors: Papineau;A.; Berhane;Y.; Wylie;T.N.; Wylie;K.M.; Sharpe;S. and Lung;O. |
Journal: Sci Rep 9 (1); 5954 (2019) |
| Title: Genome Organization of Canada Goose Coronavirus; A Novel Species Identified in a Mass Die-off of Canada Geese |
db_xref: taxon:2569586; GeneID:54124793; GeneID:54124793; GeneID:54124779; GeneID:54124779; GeneID:54124778; GeneID:54124778; GeneID:54124780; GeneID:54124780; GeneID:54124781; GeneID:54124781; GeneID:54124782; GeneID:54124782; GeneID:54124783; GeneID:54124783; GeneID:54124784; GeneID:54124784; GeneID:54124785; GeneID:54124785; GeneID:54124786; GeneID:54124786; GeneID:54124787; GeneID:54124787; GeneID:54124788; GeneID:54124788; GeneID:54124789; GeneID:54124789; GeneID:54124790; GeneID:54124790; GeneID:54124791; GeneID:54124791; GeneID:54124792; GeneID:54124792 |
| Taxonomy: Canada goose coronavirus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; unclassified Gammacoronavirus. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(28539); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(63); ExactPosition(72); strand=1); type='regulatory'); SeqFeature(FeatureLocation(ExactPosition(553); ExactPosition(20085); strand=1); type='gene'); SeqFeature(CompoundLocation(FeatureLocation(ExactPosition(553); ExactPosition(12001); strand=1); FeatureLocation(ExactPosition(12000); ExactPosition(20085); strand=1); 'join'); type='CDS'; location_operator='join'); SeqFeature(CompoundLocation(FeatureLocation(ExactPosition(11509); ExactPosition(12001); strand=1); FeatureLocation(ExactPosition(12000); ExactPosition(14814); strand=1); 'join'); type='mat_peptide'; location_operator='join'); SeqFeature(FeatureLocation(ExactPosition(14814); ExactPosition(16611); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(16611); ExactPosition(18177); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(18177); ExactPosition(19191); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(19191); ExactPosition(20082); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(553); ExactPosition(12031); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(553); ExactPosition(12031); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(553); ExactPosition(2383); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(2383); ExactPosition(6976); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(6976); ExactPosition(8485); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(8485); ExactPosition(9406); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(9406); ExactPosition(10291); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(10291); ExactPosition(10540); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(10540); ExactPosition(11176); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(11176); ExactPosition(11509); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(11509); ExactPosition(12028); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(19977); ExactPosition(19986); strand=1); type='regulatory'); SeqFeature(FeatureLocation(ExactPosition(20068); ExactPosition(23623); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(20068); ExactPosition(23623); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(23605); ExactPosition(23614); strand=1); type='regulatory'); SeqFeature(FeatureLocation(ExactPosition(23615); ExactPosition(23777); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(23615); ExactPosition(23777); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(23772); ExactPosition(23781); strand=1); type='regulatory'); SeqFeature(FeatureLocation(ExactPosition(23785); ExactPosition(23953); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(23785); ExactPosition(23953); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(23912); ExactPosition(24215); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(23912); ExactPosition(24215); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(24128); ExactPosition(24137); strand=1); type='regulatory'); SeqFeature(FeatureLocation(ExactPosition(24211); ExactPosition(24892); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(24211); ExactPosition(24892); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(24891); ExactPosition(25158); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(24891); ExactPosition(25158); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25139); ExactPosition(25148); strand=1); type='regulatory'); SeqFeature(FeatureLocation(ExactPosition(25154); ExactPosition(25346); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25154); ExactPosition(25346); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25341); ExactPosition(25350); strand=1); type='regulatory'); SeqFeature(FeatureLocation(ExactPosition(25353); ExactPosition(25632); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25353); ExactPosition(25632); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25573); ExactPosition(25783); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25573); ExactPosition(25783); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25752); ExactPosition(25761); strand=1); type='regulatory'); SeqFeature(FeatureLocation(ExactPosition(25766); ExactPosition(25967); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25766); ExactPosition(25967); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25963); ExactPosition(26221); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25963); ExactPosition(26221); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(26044); ExactPosition(26053); strand=1); type='regulatory'); SeqFeature(FeatureLocation(ExactPosition(26148); ExactPosition(27393); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(26148); ExactPosition(27393); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27388); ExactPosition(27397); strand=1); type='regulatory'); SeqFeature(FeatureLocation(ExactPosition(27397); ExactPosition(27691); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(27397); ExactPosition(27691); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27568); ExactPosition(27577); strand=1); type='regulatory'); SeqFeature(FeatureLocation(ExactPosition(27668); ExactPosition(28211); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(27668); ExactPosition(28211); strand=1); type='CDS') |
| Sequence: ATGAAAGCTTTATTTAAAACTTTCACCTTCTTTTCTCTTTTGGTGTGCTTGTCATGTCAAATTTATGGTGATGACTGGGTCTATTATTACCCATCAGCGTTTAGACCGAGTGATGGCTGGCACTTGCAGTCTGGTGCTTACCAAGTTGTGGAGCAGTCAACACTCAATTCAACTAGTGGTGCAGGTTGTACATTTGCGCATAATAGTTTTAATTTAACCATGTCGGATGGTGTTGTTCTTCAAGCGCTCCCTCCGACTGGTTGGACCGATCAAGCTGCTAAAACTTATGTTCATTTAGCAGGTTGCTCTATGGGACCATATATATTTTTTGTGTTTGGCCCCTGTAATAATAACAAAGTGTGTGGTAGACCTGGTATAAAAGGTGGCATTAGCTTCATTGTCTATGACACCAATTATACTATAATCTACCAGACTGACTTCCCTAATTGGACTGCACACACTAAGTTTTCAACTTTACAGTGTGTGGGACATAAGGGGAGCGTCTATCTAAATGGTGATCTTTTGTATCAGTTGGGTTATGATGCTACTGTTACTAATGCATCACTTGTAACATGTACCACACCTAGTGTGCAGTATTTATACAAGAGTTCACGTGCTATAAATTCTCTTGTCTATTTTCAGAATGGTACTGCGCAGGACCTCATCCTTTGTGATGATACACCGCGTGGTGTCCTTTATTGTACTTATGGTAATGGTAATCTTACAGATGGACTTTACCCTATATCAGCACTTTCAACTCCAAATAAAACTCTTGAGGTTTATTTGATTGGTAGTGTTGTTAATAACACCTATCTTGGTGTTCTTACTAATTATACTTTTTACAACCAGTCWGATGTTGATACTATTACTATTGGTACTCATGGAGACCAAATGGCTCAATTAGCAAAGTTGAAGTTATATCAAGAGTTTTCTGCTTCAGAACCTTATTATAACTTCAATTTCACTTTTTTAAAAGAGTTTGAGTTTATTCCTAATGGTAAGGCCATTTCTCTTACTGCTAATTATGGTTCTATTTATTCGTCTTGTGGTTTTACACTTGACAATTTTAATAATGGCCATTGTTTTAATTCTCTTAGTATTAAGCTTACTTATGCTCCCAAGTATTGGGGTTGTAAGGAGGCTATGTCATACTTTCAGGCGCAATGCTGCTATATGTATTCTTATGACACATCTAGTAAGTGTTATGGTATAGCTAAGGACACTGAGGATTATAAGTATGAGTGTGTTCTCTTAGTTTTGGTCTTCATGCAGCAAGGTTCTAAAATATGTACATCTCCGACTCCTCCTGTTTTAGTTGAGCAGAATGTTTTAAATAATACATTTGTCTTAGACCAATGTGTTAATTATACCATATATGGCCATTATGGTTATGGCTATATCATTAATATCACAGACTCCGTAAGTCCAGGCACTATGCTTGCTGATGGTGGTCTGTTGGTACAAGATTCATCTGGAGCCATAGATGTTTTTGCTGTAGATAATGTTTATGGCCGCCAATATTATAAAGTTAACCTCTGTAATGATGTTAACGAACAGTATGTACTTACTGGGTCAGTTGTTACTGGTAAGCTTACATCATTTAATTGCACTGGCTGTCCATTATTGTCCAACCAGTATTATCAGTTGTTTAGTAATAACACAAGGCGCAAGCGTTCACTTGATTCTCAGGTCAACGTTACTTCCTGTGATTATGTTACTTTTGGTGAGTATTGTCTTTTTCCTGACGGTACTTATAAATATATACAATCTGCAACATTTGACACACTCTTTGAGCCTCTGTTGAATGTTACTGAAAATATTCTTATTCCTGATAGTTTTAATCTTACTGTTACTGAAGAGTTTATTCAAACTCAGATGCAGCAGATTCAATTAAACTGTCTTCAATATGTTTGTGGTGCTTCAGTTCAGTGCCGTAATTTATTCAAGCAGTATGGTAGTGTTTGTGATAACATTGTTTCTATTTTGAATGGTGTTGCGCAATCTGAGAGCCAACAGCTCATATCAATGTATTCTAGTACATTGCCTGGACAGGACTTCAATCCTGTGTACGCTAATATGTCTACTGGTGGCTTTAATCTTTCTGTGTTATTGCCAACCACACCTCAATCTCGGTCTTTTATTGAAGACCTTTTGTTTGATAAGGTTGAGTCCGTAGGTTTGCCCACTGACCAGGCATACCTTGATTGTATGCGTGGATGGACAGCTAGGGACCTTATTTGTGCACAGTACTATAATGGTATTATGGTATTGCCACCTATTATAACGCCTGCTATGCAAGTTATGTATACAGGTAGTTTTATTGCATCTATGGCATGGGGTGGTCTTACTGCTGCTGGTGCCATCCCGTTTGCAACTCAGATTCAAGCACGCATCAATCATTTGGGTATAACACAGACCCTTTTGATAGATAATCAAAAGATGCTTGCTGAATCTTTTAATAATGCTGTTAAATATATGCAGCAGGGTTTTGAAGCAACATCCTCTGCATTGCAACAAATTCAAGATGTTGTCAACCAGCAGGGTGCTGTTCTGCAGGAAGTTTTAAATTCTCTTAATAAAAACTTCGGTGCAGTTTCTTCTGTTATTCAGGATATTTATAAGTCTCTTGATGAGCTTTCTGCAAATGCGCAGATGGATAGGTTGATTACTGGCCGTTTATCAGCGCTTTCTGTCTTAGCTTCTTCCAAGCAGGCTGACCAGTTGCGTGTTCAACAGCAACGCCAGCTTGCCCAGGACAAACTTAATGAGTGTGTTCTTTCTCAATCCACTCGTAATTCTTTTTGTGGTAGTGGTAAGCATGTCATGACCATACCACAAACAGCACCTAATGGAATTCTTTTTGTCCATTTTACATACACGCCGCAAACATTTAAAAATGTTACTGCGGTAGTGGGCTTTTGTGTCCGTGGTAACACCACTGACTCATCTTACGAGTATGCTCTCGTTCCAGTTAATGGAAGAGGCGTATTTATTGAAATTAATGGTACATACTATATCACTTCTCGTGATATGTATATGCCACGTAATATTACTGCTGGTGATGTTGTTACATTAACATCATGCCAAGCTAATTATGTTTATGTTAATAGAACTGTTGTCACTACTTTTGTAGACGACAGTGATTTTGATTTTGATGCAGAATTTGATAAATGGTGGAATGAGACTCAGCATGACTTTCCACAGCTTGATGAGTTCAACTATACCATTCCTCTGCTTAACATCACTCAACAAATACAGGATATACAGGATGCCATTCAAGGTTTGAATGACTCCTATGTAGACCTGCATGAGTTGTCTAAACTTACCACTTATATTAAGTGGCCATGGTATATTTGGTTGGCTATTGCCTTCCTTACTATTATTTTCTTCCTTATTTTAGGTTGGATTTTCTTTATGACTGGTTGTTGTGGTGGTTGCTGTGGCTGCTGTGGCCTAATTCCATTAGCACAGCGTTGCAGTAAGAAATCATCATACTACCAGACATTTGATGATGATGTAGTAGGCGAACGAATCAGACCTAAGAAAAATGTCTGA |