| Protein Id: AFX81108.1 |
Length: 1453 aa |
| Description: spike protein Canine coronavirus. |
Molecule type: linear |
| Data category: VRL |
Date: 26-Sep-14 |
| Source: Canine coronavirus |
| Class virus: Coronaviridae |
Virus name: Canine coronavirus |
| Host: Canis lupus familiaris |
Authors: Town;C.D.; Halpin;R.A.; Motley;J.; Ransier;A.; Fedorova;N.; Overton;L.; Tsitrin;T.; Stockwell;T.; Amedeo;P.; Bishop;B.; Chen;H.; Edworthy;P.; Gupta;N.; Katzel;D.; Li;K.; Schobel;S.; Shrivastava;S.; Thovarai;V.; Wang;S.; Regan;A.; Wentworth;D.E. and Whittaker;G. |
| Title: Direct Submission |
Journal: Submitted (15-NOV-2012) J. Craig Venter Institute; 9704 Medical |
| Taxonomy: Canine coronavirus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Alphacoronavirus; Tegacovirus. |
| db_xref: """taxon:11153, CDD:279880, CDD:279881""" |
| Sequence: MIVLILCLLLFSYNSVICTSNNDCVQVNVTQLPGNENIIKDFLFHTFKEEGSVVVGGYYPTEVWYNCSRSATTTAYKDFSNIHAFYFDMEAMENSTGNARGKPLLVHVHGDPVSIIIYISAYRDDVQGRPLLKHGLLCITKNKIIDYNTFTSAQWSAICLGDDRKIPFSVIPTDNGTKIFGLEWNDDYVTAYISDRSHHLNINNNWFNNVTILYSRSSTATWQKSAAYVYQGVSNFTYYKLNNTNGLKSYELCEDYEYCTGYATNVFAPTVGGYIPDGFSFNNWFMLTNSSTFVSGRFVTNQPLLVNCLWPVPSFGVAAQQFCFEGAQFSQCNGVSLNNTVDVIRFNLNFTTDVQSGMGATVFSLNTTGGVILEISCYNDTVSESSFYSYGEISFGVTDGPRYCFALYNGTALKYLGTLPPSVKEIAISKWGHFYINGYNFFSTFPIDCISFNLTTGDSGAFWTIAYTSYTDALVQVENTAIKKVTYCNSHINNIKCSQLTANLQNGFYPVASSEVGLVNKSVVLLPSFYSHTSVNITIDLGMKRSGYGQPIASTLSNITLPMQDNNTDVYCIRSNRFSVYFHSTCKSSLWDDVFNSDCTDVLYATAVIKTGTCPFSFDKLNNYLTFNKFCLSLNPVGANCKFDVAARTRTNEQVVRSLYVIYEEGDNIVGVPSDNSGLHDLSVLHLDSCTDYNIYGITGVGIIRQTNSTLLSGLYYTSLSGDLLGFKNVSDGVIYSVTPCDVSAHAAVIDGAIVGAMTSINSELLGLTHWTTTPNFYYYSIYNYTNERTRGTAIDSNDVDCEPIITYSNIGVCKNGALVFINVTHSDGDVQPISTGNVTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKLLTQYVSACQTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTETLDPIYKEWPNIGGSWLGGLKDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVCAQYYNGIMVLPGVANDDKMAMYTASLAGGITLGSLGGGAVSIPFAIAVQARLNYVALQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKVLAKVQDVVNTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTAWSGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLFVNATVIDLPSIIPDYIDINQTVQDILENFRPNWTVPELPLDIFNATYLNLTGEINDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWLLIGLVVIFCIPILLFCCCSTGCCGCIGCLGSCCHSICSRRQFESYEPIEKVHVH |
Nucleotide
| Nucleotide_Id: KC175341.1 |
Length: 4362bp |
| Description: Canine coronavirus strain S378; complete genome |
Source: Canine coronavirus |
| Nucleotide_type: ss-RNA |
Molecule type: linear |
| Data category: VRL |
Date: 26-Sep-14 |
| Class virus: Coronaviridae |
Virus name: Canine coronavirus |
| CDS: KC175341.1:20320..24681 |
Host: Canis lupus familiaris |
| Authors: Town;C.D.; Halpin;R.A.; Motley;J.; Ransier;A.; Fedorova;N.; Overton;L.; Tsitrin;T.; Stockwell;T.; Amedeo;P.; Bishop;B.; Chen;H.; Edworthy;P.; Gupta;N.; Katzel;D.; Li;K.; Schobel;S.; Shrivastava;S.; Thovarai;V.; Wang;S.; Regan;A.; Wentworth;D.E. and Whittaker;G. |
Journal: Submitted (15-NOV-2012) J. Craig Venter Institute; 9704 Medical |
| Title: Direct Submission |
db_xref: taxon:11153 |
| Taxonomy: Canine coronavirus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Alphacoronavirus; Tegacovirus. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(29340); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(275); ExactPosition(20323); strand=1); type='gene'); SeqFeature(CompoundLocation(FeatureLocation(ExactPosition(275); ExactPosition(12293); strand=1); FeatureLocation(ExactPosition(12292); ExactPosition(20323); strand=1); 'join'); type='CDS'; location_operator='join'); SeqFeature(FeatureLocation(ExactPosition(275); ExactPosition(605); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(605); ExactPosition(2912); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(2912); ExactPosition(7433); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(7433); ExactPosition(8903); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(8903); ExactPosition(9809); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(9809); ExactPosition(10691); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(10691); ExactPosition(10940); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(10940); ExactPosition(11525); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(11525); ExactPosition(11858); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(11858); ExactPosition(12263); strand=1); type='mat_peptide'); SeqFeature(CompoundLocation(FeatureLocation(ExactPosition(12263); ExactPosition(12293); strand=1); FeatureLocation(ExactPosition(12292); ExactPosition(15049); strand=1); 'join'); type='mat_peptide'; location_operator='join'); SeqFeature(FeatureLocation(ExactPosition(15049); ExactPosition(16846); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(16846); ExactPosition(18403); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(18403); ExactPosition(19420); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(19420); ExactPosition(20320); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(275); ExactPosition(12323); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(275); ExactPosition(12323); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(12263); ExactPosition(12320); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(20319); ExactPosition(24681); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(20319); ExactPosition(24681); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(24869); ExactPosition(25085); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(24869); ExactPosition(25085); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25029); ExactPosition(25245); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25029); ExactPosition(25245); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25241); ExactPosition(25976); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25962); ExactPosition(26211); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25962); ExactPosition(26211); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(26221); ExactPosition(27010); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(26221); ExactPosition(27010); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27022); ExactPosition(28171); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(27022); ExactPosition(28171); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28175); ExactPosition(28481); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(28175); ExactPosition(28481); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28485); ExactPosition(29127); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(28485); ExactPosition(29127); strand=1); type='CDS') |
| Sequence: ATGATTGTGCTAATATTGTGCCTCCTCTTGTTTTCGTACAATAGTGTGATTTGTACATCAAACAATGACTGTGTACAAGTTAATGTGACACAATTGCCTGGCAATGAAAACATTATTAAAGATTTTCTATTTCACACCTTCAAAGAAGAAGGAAGTGTAGTTGTTGGTGGTTATTACCCTACAGAGGTGTGGTATAACTGCTCCAGAAGCGCAACAACCACCGCTTACAAGGATTTTAGTAATATACATGCATTCTATTTTGATATGGAAGCCATGGAGAATAGTACTGGCAATGCACGAGGTAAACCTTTACTAGTACATGTTCATGGTGATCCTGTTAGTATCATCATATATATATCGGCTTATAGAGATGATGTGCAAGGAAGGCCTCTTTTAAAACATGGTTTGTTGTGTATAACTAAAAATAAAATCATTGACTATAACACGTTTACCAGCGCACAGTGGAGTGCCATATGTTTGGGTGATGACAGAAAAATACCATTCTCTGTCATACCCACAGATAATGGTACAAAAATATTTGGTCTTGAGTGGAATGATGACTATGTTACAGCCTATATTAGTGATCGTTCTCACCATTTGAACATCAATAATAATTGGTTTAACAATGTGACAATCCTATACTCTCGATCAAGCACTGCTACGTGGCAGAAGAGTGCTGCATATGTTTATCAAGGTGTTTCAAATTTTACTTATTACAAGTTAAATAACACCAATGGCTTGAAAAGCTATGAATTGTGTGAAGATTATGAATACTGCACTGGCTATGCTACCAACGTATTTGCCCCGACAGTGGGCGGTTATATACCTGATGGCTTCAGTTTTAACAATTGGTTTATGCTTACAAACAGTTCCACGTTTGTTAGTGGCAGATTTGTAACAAATCAACCATTATTGGTTAATTGTTTGTGGCCAGTGCCCAGTTTTGGTGTCGCAGCACAACAATTTTGTTTTGAAGGTGCGCAGTTTAGCCAATGTAATGGTGTGTCTTTAAACAATACAGTGGATGTCATTAGATTCAACCTTAATTTTACCACAGATGTACAATCTGGCATGGGTGCTACAGTATTTTCACTGAATACAACAGGTGGTGTCATTCTTGAGATTTCTTGTTATAATGATACAGTGAGTGAGTCAAGTTTCTACAGTTATGGTGAAATTTCATTCGGCGTAACTGATGGACCGCGTTACTGTTTCGCACTCTATAATGGCACGGCTCTTAAGTATTTAGGAACATTACCACCTAGTGTCAAGGAAATTGCTATTAGTAAGTGGGGCCATTTTTATATTAATGGTTACAATTTCTTTAGCACTTTTCCTATTGATTGTATATCTTTTAATTTAACCACTGGTGATAGTGGAGCATTTTGGACAATTGCTTACACATCGTACACTGACGCATTAGTACAAGTTGAAAACACAGCTATTAAAAAGGTGACGTATTGTAACAGTCACATTAATAACATTAAATGTTCTCAACTTACTGCTAATTTGCAAAATGGATTTTATCCTGTTGCTTCAAGTGAAGTTGGTCTTGTCAATAAGAGTGTTGTGTTACTACCTAGTTTCTATTCACATACCAGTGTTAATATAACTATTGATCTTGGTATGAAGCGTAGTGGTTATGGTCAACCCATAGCCTCAACATTAAGTAACATCACACTACCAATGCAGGATAATAACACCGATGTGTACTGCATTCGTTCTAACCGATTTTCAGTTTACTTTCATTCCACTTGTAAAAGTTCTTTATGGGACGATGTGTTTAATTCCGACTGCACAGATGTTTTATATGCTACAGCTGTTATAAAAACTGGTACTTGTCCTTTCTCGTTTGATAAATTGAACAATTACTTAACTTTTAACAAGTTCTGTTTGTCATTGAATCCTGTTGGTGCCAACTGCAAGTTTGATGTTGCCGCTCGTACAAGAACCAATGAGCAGGTTGTTAGAAGTTTATATGTAATATATGAAGAAGGAGACAACATAGTGGGTGTGCCGTCTGACAATAGTGGTCTTCACGACTTGTCAGTGCTACACTTAGACTCCTGTACAGATTATAATATATATGGTATAACTGGTGTTGGTATTATTAGACAAACTAACAGTACGCTACTTAGTGGCTTATATTACACATCACTATCAGGTGACTTGTTAGGGTTTAAAAATGTTAGTGATGGTGTCATCTATTCTGTCACGCCATGTGATGTAAGCGCACATGCTGCTGTTATTGATGGCGCCATAGTTGGAGCTATGACTTCCATTAATAGTGAACTGTTAGGTCTAACACATTGGACAACAACACCTAATTTTTATTATTATTCTATATATAATTATACCAATGAAAGGACTCGTGGCACAGCAATTGATAGTAACGATGTTGATTGTGAACCTATCATAACCTATTCTAATATAGGTGTTTGTAAAAATGGAGCTTTGGTTTTTATTAACGTCACACATTCTGATGGAGACGTTCAACCAATTAGCACCGGTAATGTCACGATACCTACAAATTTTACCATATCTGTGCAAGTTGAATACATTCAGGTTTACACTACACCGGTGTCAATAGATTGTTCAAGGTACGTTTGCAATGGTAACCCTAGATGCAATAAATTGTTAACGCAATACGTTTCTGCATGTCAAACTATTGAGCAAGCACTTGCAATGGGTGCCAGACTTGAAAACATGGAGATTGATTCCATGTTGTTTGTTTCGGAAAATGCCCTTAAATTGGCATCTGTTGAAGCATTCAATAGTACGGAAACTTTAGATCCTATTTACAAAGAATGGCCTAACATTGGTGGTTCTTGGCTAGGAGGTTTAAAAGACATATTGCCATCTCACAACAGCAAACGTAAGTACCGGTCGGCTATAGAAGATTTGCTTTTTGATAAGGTTGTAACATCTGGCTTAGGTACAGTTGATGAAGATTATAAACGTTGTACAGGTGGTTATGACATAGCTGACTTAGTGTGTGCACAATATTACAATGGCATCATGGTGCTACCTGGTGTAGCTAATGATGACAAGATGGCTATGTACACTGCATCTCTTGCAGGTGGTATAACATTAGGTTCACTTGGTGGTGGCGCAGTGTCTATACCTTTTGCAATAGCAGTTCAAGCCAGACTTAATTATGTTGCTCTACAAACTGATGTATTGAACAAGAACCAGCAGATCCTGGCTAATGCTTTCAATCAAGCTATTGGTAACATTACACAGGCATTTGGTAAGGTTAATGATGCTATACATCAAACGTCACAAGGTCTTGCTACTGTTGCTAAAGTATTGGCAAAAGTGCAAGATGTTGTTAACACACAAGGGCAAGCTTTAAGCCACCTAACAGTACAATTGCAAAATAATTTCCAAGCCATTAGTAGTTCCATTAGTGACATTTATAACAGGCTTGATGAATTGAGTGCTGATGCACAAGTTGACAGGCTGATTACAGGAAGACTTACAGCACTTAATGCATTTGTGTCTCAGACTTTAACCAGACAAGCAGAGGTTAGGGCTAGCAGACAGCTTGCTAAAGACAAGGTAAATGAATGCGTTAGGTCTCAATCTCAGAGATTTGGATTCTGTGGTAATGGTACACATTTATTTTCACTTGCAAATGCAGCACCAAATGGCATGATCTTCTTTCACACAGTGCTATTACCAACAGCTTATGAAACCGTGACAGCCTGGTCAGGTATTTGTGCATCAGATGGCGATCGTACTTTTGGACTTGTTGTTAAGGATGTCCAGTTGACGCTGTTTCGCAATCTAGATGACAAATTCTATTTGACTCCCAGAACTATGTATCAGCCTAGAGTTGCAACTAGTTCTGATTTTGTTCAAATTGAAGGATGTGATGTGTTGTTTGTTAATGCAACTGTAATTGACTTGCCTAGTATTATACCTGACTATATTGATATTAATCAAACTGTTCAGGACATATTAGAAAATTTCAGACCAAATTGGACTGTACCTGAGTTGCCACTTGACATTTTCAATGCAACCTACTTAAACCTGACTGGTGAAATTAATGACTTAGAATTTAGGTCAGAAAAGTTACATAACACCACAGTAGAACTTGCTATTCTCATTGATAATATTAATAACACATTAGTCAATCTTGAATGGCTCAATAGAATTGAAACTTATGTAAAATGGCCTTGGTATGTGTGGCTACTAATTGGATTAGTAGTAATATTCTGCATACCCATATTGCTATTTTGTTGTTGTAGTACTGGTTGTTGTGGATGTATTGGGTGTTTAGGAAGCTGTTGTCATTCCATATGTAGTAGAAGGCAATTTGAAAGTTATGAACCAATTGAAAAAGTTCATGTTCACTGA |