| Protein Id: YP_009380521.1 |
Length: 1126 aa |
| Description: spike protein Coronavirus AcCoV-JC34. |
Molecule type: linear |
| Data category: VRL |
Date: 13-Aug-18 |
| Source: Coronavirus AcCoV-JC34 |
| Class virus: Coronaviridae |
Virus name: Coronavirus AcCoV |
| Host: Apodemus chevrieri |
Authors: Ge;X.Y.; Yang;W.H.; Zhou;J.H.; Li;B.; Zhang;W.; Shi;Z.L. and Zhang;Y.Z. |
| Title: Detection of alpha- and betacoronaviruses in rodents from Yunnan; China |
Journal: Virol J 14 (1); 98 (2017) |
| Taxonomy: Coronavirus AcCoV-JC34 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Alphacoronavirus; Luchacovirus; unclassified Luchacovirus. |
| db_xref: """taxon:1964806, CDD:279881, GeneID:33133641""" |
| Sequence: MALIFVLMLITLYRCPFVLCNFQVCTDQLRQQEVYLPNAVSNATYIATAVFPTRHWHCGSSSNSTPGDNKFNGIGVFVHRFNHPNWWHFAAYPAAPTNKTWILFWWHRATQASTVFQVCKYQQPAVDVLTSGFRCEAPTNPPCSAIVNMAIECLINSTFRPTTFSFSYVTWYNSEINAVIHGQRFSFVYEGFLWSNASAFCYDANGCIFNIPNTTSDWLVSTDSSGAINNFVDCGFDYESQLKCKNLVFELEPAVYHGAALPIESSVYYVANDLADCAFSFADIFSDGTGNYGGLRRHVFTNCWVNYTSWFLCDDGLACIIFNAIFSEVVYNLTQPDGLINPFLRCNGLDVYTIVKGCSAGYVLRYQLFDSGQFNPDAYTPDYMECFGYFQIDRSYIVYNAKFITEGLTVCVLQPVEPELGVCKQYTIDGVTFQGILHTSNANITTFHNLLYYGDMVSHVRIKGIVYSVEPCNSFYYSVLKTRSEVGYLYSGANCNSSDVVTFSRRARARTLTDSSLGCLVDVQLTNNNYTTCSYPIGNGLCADVNVTGMPVVGNIYIQPHDTDYARPILSPQIVSLPLDHVINVKEQFVQTSAPKFDVDCERYICDVSVQCKELLAKYGGYCPKIVSDIKSSSLQLDYQVQGIYKTLNVDVKVPDVDFGAFNFSMFESEPNGRSFIEDILFDKIVTTGPGFYQDYYDCKKMNLEDITCKQYYNGIMVIPPVMDDTLITFWSSAVAGSMTAGLFGGQAGMVSWSIAVAGRLNALGVMQDALVNDVNKLANGFNNLTQYVADGFKTTSQALSAIQSVVNNNAQQISQLVQGLSENFGAISNNFLVIAERLERLEAQMQMDRLINGRMNILQNFVTNYKLSISELKSQQILAQSLVNECVYAQSNRNGFCGDGLHLFSLMQRAPDGIMFFHYTLVPNNTIDVETTPGLCLGNNVCIAPRDGLFVKTNIRSDVWHFTTRNLYNPQAITVNNSVIVNGGVNFTSLNQTIEGIEPPTIPSFDEEFEDLYKNITLELEQLKNITFDPELLNLTYYIDRLDELSTNVSQLHVDISEFNKYVQYIKWPWYVWLAIFLVLVLFSFMLLWCCCATGCCGCCGMLGSACNGCCTKPQTVEFEKVHVQ |
Nucleotide
| Nucleotide_Id: NC_034972.1 |
Length: 3381bp |
| Description: Coronavirus AcCoV-JC34; complete genome |
Source: Coronavirus AcCoV-JC34 |
| Nucleotide_type: ss-RNA |
Molecule type: linear |
| Data category: VRL |
Date: 13-Aug-18 |
| Class virus: Coronaviridae |
Virus name: Coronavirus AcCoV |
| CDS: NC_034972.1:20376..23756 |
Host: Apodemus chevrieri |
| Authors: Ge;X.Y.; Yang;W.H.; Zhou;J.H.; Li;B.; Zhang;W.; Shi;Z.L. and Zhang;Y.Z. |
Journal: Virol J 14 (1); 98 (2017) |
| Title: Detection of alpha- and betacoronaviruses in rodents from Yunnan; China |
db_xref: taxon:1964806; GeneID:33133648; GeneID:33133648; GeneID:33133640; GeneID:33133640; GeneID:33133641; GeneID:33133641; GeneID:33133642; GeneID:33133642; GeneID:33133643; GeneID:33133643; GeneID:33133644; GeneID:33133644; GeneID:33133645; GeneID:33133645; GeneID:33133646; GeneID:33133646; GeneID:33133647; GeneID:33133647 |
| Taxonomy: Coronavirus AcCoV-JC34 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Alphacoronavirus; Luchacovirus; unclassified Luchacovirus. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(27682); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(436); ExactPosition(12361); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(436); ExactPosition(12361); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(12360); ExactPosition(20376); strand=1); type='gene'); SeqFeature(FeatureLocation(BeforePosition(12360); ExactPosition(20376); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(20375); ExactPosition(23756); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(20375); ExactPosition(23756); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(23752); ExactPosition(24397); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(23752); ExactPosition(24397); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(24396); ExactPosition(24633); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(24396); ExactPosition(24633); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(24642); ExactPosition(25389); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(24642); ExactPosition(25389); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25400); ExactPosition(25901); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25400); ExactPosition(25901); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25902); ExactPosition(27072); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25902); ExactPosition(27072); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27073); ExactPosition(27391); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(27073); ExactPosition(27391); strand=1); type='CDS') |
| Sequence: ATGGCTCTCATTTTTGTGCTTATGCTCATAACCCTCTATCGTTGCCCTTTTGTCCTGTGCAACTTTCAAGTTTGCACAGATCAATTACGCCAACAAGAGGTTTATCTACCTAATGCTGTATCAAATGCAACTTACATTGCTACTGCTGTGTTTCCAACTCGGCACTGGCACTGTGGGTCTTCATCTAATAGCACGCCAGGAGACAACAAGTTTAATGGCATAGGTGTTTTTGTGCATAGGTTTAATCATCCCAATTGGTGGCATTTTGCAGCCTATCCTGCAGCACCTACTAACAAGACTTGGATCTTGTTTTGGTGGCATAGGGCCACTCAAGCCAGCACGGTTTTCCAAGTTTGTAAGTACCAACAGCCTGCTGTTGATGTGCTTACTTCTGGTTTTAGGTGCGAAGCCCCCACAAACCCACCTTGTTCTGCTATTGTCAATATGGCCATAGAATGTTTGATCAACTCCACATTCAGACCCACAACATTTTCCTTTAGCTATGTCACGTGGTATAACAGTGAAATTAATGCTGTTATACATGGGCAGCGTTTTAGTTTTGTCTATGAAGGGTTTTTGTGGAGTAATGCGTCAGCATTTTGCTATGATGCAAATGGCTGTATTTTCAATATTCCCAACACTACATCAGATTGGCTAGTTTCCACTGATAGTAGTGGTGCTATAAACAATTTTGTAGATTGTGGTTTTGATTATGAGAGTCAGCTTAAGTGTAAGAATCTCGTCTTCGAACTAGAACCTGCAGTGTATCATGGCGCAGCACTCCCCATAGAGTCATCTGTTTATTATGTTGCAAACGACCTCGCAGATTGTGCGTTTTCGTTTGCAGACATATTTAGTGACGGTACAGGCAATTATGGTGGTCTGCGTAGGCATGTTTTTACAAATTGCTGGGTTAATTATACATCATGGTTTTTGTGTGATGATGGTCTTGCCTGCATTATATTTAATGCAATCTTTTCAGAGGTTGTATATAATCTAACACAACCTGATGGTCTAATCAACCCTTTTCTTAGGTGTAATGGTCTTGATGTTTACACAATTGTTAAGGGTTGCAGTGCAGGGTACGTTTTAAGGTACCAGCTATTTGATAGTGGGCAATTTAACCCTGATGCCTACACCCCTGATTACATGGAATGTTTTGGTTATTTTCAAATAGATCGTAGTTATATTGTTTACAATGCAAAGTTTATTACAGAAGGCTTAACAGTTTGTGTTTTGCAACCTGTCGAGCCAGAGCTTGGTGTTTGTAAACAGTATACTATAGATGGTGTTACATTTCAGGGTATACTACATACCTCTAATGCTAACATAACCACTTTCCATAATTTACTCTATTATGGTGATATGGTTAGTCATGTTAGGATTAAGGGTATAGTGTACTCCGTTGAGCCATGTAACAGTTTTTATTACAGCGTGTTAAAGACCAGGTCTGAAGTAGGTTACCTGTATTCTGGTGCTAATTGTAATAGTAGTGATGTTGTAACATTTTCACGTCGTGCCAGAGCCCGTACACTCACTGATAGCAGTCTGGGTTGTCTGGTCGATGTACAACTAACCAATAACAATTACACCACATGTAGTTACCCTATAGGTAATGGTCTTTGTGCTGATGTTAATGTAACAGGTATGCCTGTTGTAGGCAATATTTACATACAGCCTCATGACACTGATTATGCTAGGCCTATTCTTAGTCCACAGATTGTTTCTTTGCCACTGGATCACGTCATCAATGTTAAGGAGCAGTTTGTTCAAACATCAGCTCCGAAGTTTGATGTCGATTGTGAACGTTACATTTGTGACGTATCTGTTCAGTGTAAGGAACTTCTTGCAAAGTATGGTGGTTACTGCCCTAAGATTGTTAGTGATATTAAGTCTTCAAGTTTGCAGCTTGATTACCAAGTGCAGGGCATATATAAAACCCTTAATGTTGATGTTAAGGTACCTGATGTTGATTTTGGTGCATTTAACTTCAGCATGTTTGAATCAGAACCTAATGGACGCTCCTTTATTGAGGACATACTCTTTGATAAAATTGTGACTACAGGTCCAGGGTTTTATCAGGACTACTATGATTGCAAGAAGATGAATCTTGAGGACATCACCTGTAAACAGTATTATAATGGTATTATGGTGATACCCCCCGTCATGGATGACACACTCATCACCTTCTGGTCATCAGCTGTTGCAGGCTCTATGACAGCAGGTCTTTTTGGTGGTCAAGCAGGTATGGTGTCTTGGTCCATAGCTGTTGCAGGTAGGCTTAATGCACTTGGTGTTATGCAAGACGCTCTTGTCAATGATGTTAATAAACTTGCTAATGGTTTTAACAACCTCACACAGTATGTGGCTGATGGTTTTAAAACCACTAGTCAAGCACTTTCTGCTATACAATCTGTTGTTAACAATAATGCACAGCAAATCTCTCAGCTAGTCCAGGGACTCAGCGAGAACTTTGGTGCTATTAGTAATAACTTTCTAGTCATAGCAGAACGGCTAGAGCGTCTAGAGGCCCAAATGCAGATGGATAGGCTTATTAATGGCCGTATGAATATATTGCAAAATTTTGTTACTAATTATAAACTTTCTATATCTGAGCTTAAATCACAGCAAATTCTTGCACAGAGTTTGGTTAATGAATGTGTTTACGCACAGAGCAATAGGAATGGTTTCTGTGGTGATGGTCTTCACCTTTTTTCCTTGATGCAACGAGCTCCTGATGGCATCATGTTTTTCCATTACACACTTGTGCCCAATAATACTATTGATGTTGAGACAACACCAGGTCTTTGTTTGGGTAATAATGTGTGTATTGCACCCAGAGATGGACTCTTTGTTAAGACCAATATTAGGTCTGATGTCTGGCATTTTACCACTCGTAATCTTTACAACCCACAAGCTATCACTGTTAATAACTCGGTTATAGTTAATGGTGGTGTAAATTTTACTAGTCTTAACCAGACTATTGAGGGAATTGAACCACCAACCATTCCTTCTTTTGATGAAGAATTTGAAGACTTGTACAAGAATATAACATTGGAGCTCGAACAGCTTAAAAATATAACATTTGACCCAGAACTACTTAATTTGACATATTATATAGATAGGCTCGATGAGCTTTCTACTAATGTGTCACAGTTGCACGTTGATATATCGGAGTTTAATAAGTATGTGCAATATATTAAGTGGCCCTGGTATGTCTGGCTCGCTATATTCTTGGTACTTGTACTTTTCAGCTTCATGTTGCTCTGGTGCTGCTGTGCAACTGGCTGTTGTGGTTGTTGCGGCATGCTAGGCTCTGCTTGTAATGGCTGTTGTACTAAACCTCAAACTGTTGAATTTGAAAAGGTCCACGTACAATGA |