| Protein Id: AAT98580.1 |
Length: 1356 aa |
| Description: spike glycoprotein Human coronavirus HKU1. |
Molecule type: linear |
| Data category: VRL |
Date: 27-Jan-06 |
| Source: Human coronavirus HKU1 (HCoV-HKU1) |
| Class virus: Coronaviridae |
Virus name: Human coronavirus |
| Host: Homo sapiens |
Authors: Woo;P.C.; Lau;S.K.; Chu;C.M.; Chan;K.H.; Tsoi;H.W.; Huang;Y.; Wong;B.H.; Poon;R.W.; Cai;J.J.; Luk;W.K.; Poon;L.L.; Wong;S.S.; Guan;Y.; Peiris;J.S. and Yuen;K.Y. |
| Title: Characterization and complete genome sequence of a novel coronavirus; coronavirus HKU1; from patients with pneumonia |
Journal: J Virol 79 (2); 884-895 (2005) |
| Taxonomy: Human coronavirus HKU1 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus. |
| db_xref: """taxon:290028, CDD:293060, CDD:286493, CDD:279880, CDD:279881, GeneID:3200426""" |
| Sequence: MLLIIFILPTTLAVIGDFNCTNFAINDLNTTVPRISEYVVDVSYGLGTYYILDRVYLNTTILFTGYFPKSGANFRDLSLKGTTYLSTLWYQKPFLSDFNNGIFSRVKNTKLYVNKTLYSEFSTIVIGSVFINNSYTIVVQPHNGVLEITACQYTMCEYPHTICKSKGSSRNESWHFDKSEPLCLFKKNFTYNVSTDWLYFHFYQERGTFYAYYADSGMPTTFLFSLYLGTLLSHYYVLPLTCNAISSNTDNETLQYWVTPLSKRQYLLKFDNRGVITNAVDCSSSFFSEIQCKTKSLLPNTGVYDLSGFTVKPVATVHRRIPDLPDCDIDKWLNNFNVPSPLNWERKIFSNCNFNLSTLLRLVHTDSFSCNNFDESKIYGSCFKSIVLDKFAIPNSRRSDLQLGSSGFLQSSNYKIDTTSSSCQLYYSLPAINVTINNYNPSSWNRRYGFNNFNLSSHSVVYSRYCFSVNNTFCPCAKPSFASSCKSHKPPSASCPIGTNYRSCESTTVLDHTDWCRCSCLPDPITAYDPRSCSQKKSLVGVGEHCAGFGVDEEKCGVLDGSYNVSCLCSTDAFLGWSYDTCVSNNRCNIFSNFILNGINSGTTCSNDLLQPNTEVFTDVCVDYDLYGITGQGIFKEVSAVYYNSWQNLLYDSNGNIIGFKDFVTNKTYNIFPCYAGRVSAAFHQNASSLALLYRNLKCSYVLNNISLTTQPYFDSYLGCVFNADNLTDYSVSSCALRMGSGFCVDYNSPSSSSSRRKRRSISASYRFVTFEPFNVSFVNDSIESVGGLYEIKIPTNFTIVGQEEFIQTNSPKVTIDCSLFVCSNYAACHDLLSEYGTFCDNINSILDEVNGLLDTTQLHVADTLMQGVTLSSNLNTNLHFDVDNINFKSLVGCLGPHCGSSSRSFFEDLLFDKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSESQISGYTTAATVAAMFPPWSAAAGIPFSLNVQYRINGLGVTMDVLNKNQKLIATAFNNALLSIQNGFSATNSALAKIQSVVNSNAQALNSLLQQLFNKFGAISSSLQEILSRLDALEAQVQIDRLINGRLTALNAYVSQQLSDISLVKFGAALAMEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFMHFSYKPISFKTVLVSPGLCISGDVGIAPKQGYFIKHNDHWMFTGSSYYYPEPISDKNVVFMNTCSVNFTKAPLVYLNHSVPKLSDFESELSHWFKNQTSIAPNLTLNLHTINATFLDLYYEMNLIQESIKSLNNSYINLKDIGTYEMYVKWPWYVWLLISFSFIIFLVLLFFICCCTGCGSACFSKCHNCCDEYGGHHDFVIKTSHDD |
Nucleotide
| Nucleotide_Id: AY597011.2 |
Length: 4071bp |
| Description: Human coronavirus HKU1 genotype A; complete genome |
Source: Human coronavirus HKU1 (HCoV-HKU1) |
| Nucleotide_type: RNA |
Molecule type: linear |
| Data category: VRL |
Date: 27-Jan-06 |
| Class virus: Coronaviridae |
Virus name: Human coronavirus |
| CDS: AY597011.2:22942..27012 |
Host: Homo sapiens |
| Authors: Woo;P.C.; Lau;S.K.; Chu;C.M.; Chan;K.H.; Tsoi;H.W.; Huang;Y.; Wong;B.H.; Poon;R.W.; Cai;J.J.; Luk;W.K.; Poon;L.L.; Wong;S.S.; Guan;Y.; Peiris;J.S. and Yuen;K.Y. |
Journal: J Virol 79 (2); 884-895 (2005) |
| Title: Characterization and complete genome sequence of a novel coronavirus; coronavirus HKU1; from patients with pneumonia |
db_xref: taxon:290028; GeneID:3200429; GeneID:3200429; GeneID:3200425; GeneID:3200425; GeneID:3200426; GeneID:3200426; GeneID:3200427; GeneID:3200427; GeneID:3200430; GeneID:3200430; GeneID:3200428; GeneID:3200428; GeneID:3200423; GeneID:3200423; GeneID:3200424; GeneID:3200424 |
| Taxonomy: Human coronavirus HKU1 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(29926); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(205); ExactPosition(21753); strand=1); type='gene'); SeqFeature(CompoundLocation(FeatureLocation(ExactPosition(205); ExactPosition(13600); strand=1); FeatureLocation(ExactPosition(13599); ExactPosition(21753); strand=1); 'join'); type='CDS'; location_operator='join'); SeqFeature(FeatureLocation(ExactPosition(205); ExactPosition(871); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(871); ExactPosition(2632); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(2632); ExactPosition(8719); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(3037); ExactPosition(3517); strand=1); type='misc_feature'); SeqFeature(FeatureLocation(ExactPosition(8719); ExactPosition(10207); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(10207); ExactPosition(11116); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(11116); ExactPosition(11977); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(11977); ExactPosition(12244); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(12244); ExactPosition(12835); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(12835); ExactPosition(13165); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(13165); ExactPosition(13576); strand=1); type='mat_peptide'); SeqFeature(CompoundLocation(FeatureLocation(ExactPosition(13576); ExactPosition(13600); strand=1); FeatureLocation(ExactPosition(13599); ExactPosition(16359); strand=1); 'join'); type='mat_peptide'; location_operator='join'); SeqFeature(FeatureLocation(ExactPosition(16359); ExactPosition(18168); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(18168); ExactPosition(19731); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(19731); ExactPosition(20853); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(20853); ExactPosition(21750); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(21772); ExactPosition(22933); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(21772); ExactPosition(22933); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(22941); ExactPosition(27012); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(22941); ExactPosition(27012); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27050); ExactPosition(27380); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(27050); ExactPosition(27380); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27372); ExactPosition(27621); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(27372); ExactPosition(27621); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27632); ExactPosition(28304); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(27632); ExactPosition(28304); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28319); ExactPosition(29645); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(28319); ExactPosition(29645); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28341); ExactPosition(28959); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(28341); ExactPosition(28959); strand=1); type='CDS') |
| Sequence: ATGTTATTAATTATTTTTATTTTGCCTACAACATTAGCTGTTATAGGTGATTTTAATTGTACTAATTTTGCTATTAATGATTTAAACACCACAGTTCCTCGCATAAGTGAGTATGTTGTGGATGTTTCTTATGGTTTGGGTACATATTATATACTTGATCGTGTTTATTTAAATACTACTATATTATTTACTGGTTATTTCCCTAAATCTGGTGCCAATTTTAGGGATCTATCTTTAAAAGGTACTACATATTTGAGTACTCTTTGGTATCAGAAACCCTTTTTATCTGATTTTAATAATGGTATTTTTTCTAGAGTTAAGAATACTAAGTTGTATGTTAATAAAACTTTGTATAGTGAGTTTAGTACTATAGTTATAGGTAGTGTTTTTATTAACAACTCTTATACTATTGTTGTTCAACCTCATAATGGTGTTTTGGAGATTACAGCTTGTCAATACACTATGTGTGAGTATCCTCATACTATTTGTAAATCTAAAGGTAGTTCTCGTAATGAATCTTGGCATTTTGATAAATCTGAACCTTTGTGTCTGTTCAAGAAAAATTTTACTTATAATGTTTCTACAGATTGGTTGTATTTTCATTTTTATCAAGAACGTGGCACTTTTTATGCTTATTATGCTGATTCTGGCATGCCTACTACTTTTTTATTTAGTTTGTATCTTGGTACTCTTTTATCTCATTATTATGTTTTGCCTTTGACTTGTAATGCTATATCTTCTAATACTGATAATGAGACTTTACAATATTGGGTCACACCTTTGTCTAAACGCCAATATCTTCTTAAATTTGACAACCGTGGTGTTATTACTAATGCTGTTGATTGTTCTAGTAGTTTCTTTAGCGAGATTCAATGTAAAACTAAATCTTTATTACCTAATACTGGTGTTTATGACTTATCTGGTTTTACTGTTAAGCCTGTTGCAACTGTACATCGTCGTATTCCTGATTTACCTGATTGTGACATTGATAAATGGCTTAACAATTTTAATGTACCCTCACCTCTTAATTGGGAACGTAAAATTTTTTCTAATTGCAACTTTAATTTGAGTACTTTGCTTCGTTTAGTTCATACTGATTCTTTTTCTTGTAATAATTTTGATGAATCTAAGATATATGGTAGTTGTTTTAAGAGTATTGTTTTAGATAAATTTGCCATACCCAACTCCAGACGATCTGATTTGCAGTTGGGCAGTTCTGGTTTTCTGCAATCTTCTAATTATAAAATTGACACTACTTCTAGTTCTTGTCAATTGTATTATAGTTTGCCTGCAATTAATGTTACTATTAATAATTATAATCCTTCTTCTTGGAATAGAAGGTATGGTTTTAATAATTTTAATTTGAGCTCTCATAGTGTTGTTTACTCACGTTATTGTTTTTCTGTTAATAATACTTTTTGTCCTTGTGCTAAACCTTCTTTTGCTTCAAGTTGCAAGAGTCATAAACCACCTTCTGCTTCCTGTCCTATTGGTACTAATTATCGTTCTTGTGAGAGTACTACTGTACTCGACCACACTGACTGGTGTAGGTGTTCTTGTTTACCTGATCCTATAACTGCTTATGACCCTAGGTCTTGTTCTCAAAAAAAGTCTCTGGTTGGTGTTGGTGAACATTGTGCAGGGTTCGGTGTTGATGAAGAAAAGTGTGGTGTATTGGATGGATCATATAATGTTTCTTGTCTTTGTAGTACTGATGCCTTTCTAGGTTGGTCTTATGACACTTGCGTCAGTAACAACCGTTGTAATATTTTTTCTAATTTTATTTTAAATGGTATCAATAGTGGTACCACTTGTTCTAATGATTTATTGCAGCCTAATACTGAAGTTTTTACTGATGTTTGTGTTGATTACGACCTTTATGGTATTACAGGACAAGGTATTTTTAAAGAAGTTTCTGCTGTTTATTATAATAGTTGGCAAAATCTTTTGTATGATTCTAATGGCAACATTATTGGTTTTAAAGATTTTGTTACTAATAAAACATATAATATTTTCCCTTGTTATGCAGGAAGAGTTTCTGCTGCTTTTCATCAAAATGCTTCCTCTTTGGCTTTACTTTATCGTAATTTAAAATGTAGCTATGTTTTGAATAATATTTCTTTAACTACTCAGCCATATTTTGATAGTTATCTTGGTTGCGTTTTTAATGCTGATAATTTAACTGATTATTCTGTTTCTTCTTGTGCTCTTCGCATGGGTAGTGGTTTTTGTGTTGATTATAACTCACCTTCTTCTTCCTCTTCGCGTCGTAAACGTAGAAGTATTTCTGCTTCTTATCGTTTTGTTACTTTTGAACCCTTTAATGTCAGTTTTGTTAATGACAGTATTGAGTCTGTGGGTGGTCTTTATGAGATCAAAATTCCCACTAACTTTACTATAGTTGGTCAAGAGGAATTTATTCAAACTAATTCTCCTAAAGTTACTATTGATTGTTCTTTATTTGTCTGTTCTAATTATGCAGCTTGCCATGACTTATTGTCAGAGTATGGCACTTTTTGTGATAATATTAATAGTATTTTAGATGAAGTTAATGGTTTACTTGATACTACTCAATTGCATGTAGCTGATACTCTTATGCAAGGTGTCACACTTAGCTCCAATCTTAATACTAATTTGCATTTTGATGTTGATAATATTAATTTTAAATCCCTAGTTGGATGTTTAGGTCCACACTGCGGTTCTTCTTCTCGTTCTTTTTTTGAAGATTTATTGTTTGACAAAGTTAAACTTTCAGATGTTGGTTTTGTTGAAGCTTATAACAATTGTACTGGTGGTAGTGAAATTAGAGATCTTCTTTGTGTACAATCCTTTAATGGTATTAAAGTTTTGCCTCCTATTTTGTCTGAATCTCAAATTTCTGGTTACACCACAGCCGCTACTGTTGCTGCTATGTTTCCACCATGGTCAGCAGCAGCTGGCATACCATTTTCTCTTAATGTACAATATAGAATTAATGGTTTGGGTGTTACTATGGATGTTCTTAATAAAAATCAAAAGTTGATAGCTACTGCTTTTAATAATGCTCTTCTTTCTATTCAGAATGGTTTTAGTGCTACCAACTCTGCACTTGCTAAAATACAAAGTGTTGTTAATTCTAATGCTCAAGCACTTAATAGTTTGTTACAGCAATTATTTAATAAATTTGGTGCAATTAGTTCTTCTTTACAAGAAATTTTATCTCGTCTCGATGCTTTAGAGGCTCAGGTTCAGATTGATAGGCTTATTAATGGTCGTTTAACTGCTTTAAATGCTTATGTCTCTCAACAGCTTAGTGATATTTCTCTTGTAAAATTTGGTGCTGCTTTAGCTATGGAGAAGGTTAATGAGTGTGTTAAAAGTCAATCTCCTCGTATTAATTTTTGTGGTAATGGTAATCATATTTTGTCATTAGTTCAAAATGCTCCTTATGGTTTGTTGTTTATGCATTTTAGTTATAAACCTATTTCTTTTAAAACTGTTTTAGTAAGTCCTGGTTTGTGTATATCAGGTGATGTAGGTATTGCACCTAAACAAGGGTATTTTATTAAACATAATGATCATTGGATGTTCACTGGTAGTTCTTACTATTATCCTGAACCAATTTCAGATAAAAATGTTGTTTTTATGAATACTTGTTCTGTTAATTTTACTAAAGCGCCTCTTGTTTATTTGAATCATTCTGTACCAAAATTGTCTGATTTTGAATCTGAGTTATCTCATTGGTTTAAAAATCAAACATCCATTGCGCCTAATTTGACTTTAAATCTTCATACTATTAATGCTACTTTTTTAGATTTGTATTATGAGATGAATCTTATTCAAGAGTCTATTAAGTCTTTGAATAATAGTTATATCAATCTTAAAGATATAGGTACATATGAAATGTATGTAAAATGGCCTTGGTATGTTTGGCTACTAATTTCTTTTTCATTTATAATATTCCTTGTATTGCTCTTTTTTATATGTTGTTGTACTGGTTGTGGTTCTGCATGTTTTAGTAAATGTCATAATTGTTGTGATGAGTATGGTGGTCATCATGATTTTGTTATCAAAACATCTCATGATGATTAG |