| Protein Id: YP_009336484.1 |
Length: 1134 aa |
| Description: spike glycoprotein Lucheng Rn rat coronavirus. |
Molecule type: linear |
| Data category: VRL |
Date: 27-Mar-20 |
| Source: Lucheng Rn rat coronavirus |
| Class virus: Coronaviridae |
Virus name: Lucheng Rn rat coronavirus |
| Host: Rattus norvegicus |
Authors: Lin;X.D.; Wang;W.; Hao;Z.Y.; Wang;Z.X.; Guo;W.P.; Guan;X.Q.; Wang;M.R.; Wang;H.W.; Zhou;R.H.; Li;M.H.; Tang;G.P.; Wu;J.; Holmes;E.C. and Zhang;Y.Z. |
| Title: Extensive diversity of coronaviruses in bats from China |
Journal: Virology 507; 1-10 (2017) |
| Taxonomy: Lucheng Rn rat coronavirus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Alphacoronavirus; Luchacovirus. |
| db_xref: """taxon:1508224, CDD:279881, GeneID:30853692""" |
| Sequence: MYFFLLLLFVSADAAIQTCPAPGNVNLDISKLYYGTQASINATFQVVQVLPQVPWKCNSYSNGPSNKFNGIGVFVDLASAQHSWHLFVYPSMPTNKTWILSWADTHTSFEHGSVISYVQICKYPSNVVTDITNGNGCHTNMAGPGATTCDVILSSPLECVLNRTYSQQYAGVSYITWYNDHIIASIQGEVFTFDIGEVLQWSNFSAFCGTGNKCGFSYATTLSEWLVRTDNDGTVIDYVICDTDFESQLKCKNMVFELTPAVYSGSAVELQSAIYYVSNELPDCDFSFADMFMDGTGNFEGLRRHVFSNCWVNYTAWFACADDYSCIIFNAIFAEVRYKLSQPDGLVNPFIKCNGLDLYSITKGCSSGFVLRYQLYANGSFDVNSYTPDYMECFGYFALYNGYVIYNAKFVSKGLTVCVVQPVEPELDVCKSYTIDGVTFQGILRNTTHQIDSFHNILYYGDMVSYVRIRGVVYAVESCNRFYYSVFKTLSAIGYLYSGATCDSTDVTTFMTKARATTFVDSSLGCFIDVSVTDGNYTDCLNPIGNGFCVDVNVTGQPVVGNIFIQTHDTDYARPILTAQQIELPIDHYVSVKEQFIQTSTPKFDVDCERYICDVSSDCRELLVKYGGYCSKILADIKSSSIQLDYQILGLYKTLAVDFKVPDIDFGDFNFSMYMSEANGRSFIEDLLFDKIVTTGPGFYQDYYDCKKMNLQDLTCKQYYNGIMVIPPVMDDTLITFWSSAVAGSMTAGLFGGQAGMVSWTVALAGRLNALGVMQDALVEDVNKLANGFNNLTQYVSDGFKTTSQALSTIQAVVNNNAQQVSQLVQGLSENFGAISNNFALIAERLERIEAAMQMDRLINGRMNILQNFVTNYKLSISELKSQQALAQSLINECVYAQSSRNGFCGDGLHLFSLMQRAPDGIMFFHYTLKPNNTIIVETTPGLCLSNDVCIAPKDGLFVRLSTARDTDWHFTTRNRYSPEPITVNNTLTISGGVNFTVVNSTIDGIEPPANPSFDEEFAELYKNVTLELEQLKNISFDPEMLNLTYYIDRLDELATNVSQLHVDVSEFNKFVQYIKWPWYVWLAIFLVLVLFSFLMLWCCCATGCCGCCGLCGAACNGCCTKPQPIEFEKVHVQ |
Nucleotide
| Nucleotide_Id: NC_032730.1 |
Length: 3405bp |
| Description: Lucheng Rn rat coronavirus isolate Lucheng-19; complete genome |
Source: Lucheng Rn rat coronavirus |
| Nucleotide_type: RNA |
Molecule type: linear |
| Data category: VRL |
Date: 27-Mar-20 |
| Class virus: Coronaviridae |
Virus name: Lucheng Rn rat coronavirus |
| CDS: NC_032730.1:21412..24816 |
Host: Rattus norvegicus |
| Authors: Lin;X.D.; Wang;W.; Hao;Z.Y.; Wang;Z.X.; Guo;W.P.; Guan;X.Q.; Wang;M.R.; Wang;H.W.; Zhou;R.H.; Li;M.H.; Tang;G.P.; Wu;J.; Holmes;E.C. and Zhang;Y.Z. |
Journal: Virology 507; 1-10 (2017) |
| Title: Extensive diversity of coronaviruses in bats from China |
db_xref: taxon:1508224; GeneID:30853696; GeneID:30853696; GeneID:30853692; GeneID:30853692; GeneID:30853693; GeneID:30853693; GeneID:30853694; GeneID:30853694; GeneID:30853695; GeneID:30853695 |
| Taxonomy: Lucheng Rn rat coronavirus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Alphacoronavirus; Luchacovirus. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(28763); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(331); ExactPosition(20580); strand=1); type='gene'); SeqFeature(CompoundLocation(FeatureLocation(ExactPosition(331); ExactPosition(12538); strand=1); FeatureLocation(ExactPosition(12537); ExactPosition(20580); strand=1); 'join'); type='CDS'; location_operator='join'); SeqFeature(FeatureLocation(ExactPosition(21411); ExactPosition(24816); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(21411); ExactPosition(24816); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25456); ExactPosition(25693); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25456); ExactPosition(25693); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25702); ExactPosition(26449); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25702); ExactPosition(26449); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(26973); ExactPosition(28149); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(26973); ExactPosition(28149); strand=1); type='CDS') |
| Sequence: ATGTATTTCTTTTTGCTCCTGTTGTTTGTTAGTGCTGATGCTGCCATTCAAACCTGTCCTGCCCCAGGTAATGTTAACTTGGATATCTCCAAGTTATATTATGGAACGCAAGCATCTATTAATGCCACGTTTCAAGTTGTTCAAGTTCTGCCCCAAGTACCGTGGAAGTGCAATAGTTATTCTAATGGTCCTTCTAATAAGTTTAACGGTATAGGTGTTTTTGTAGACCTAGCCTCCGCCCAGCATTCATGGCACCTTTTTGTTTATCCATCTATGCCTACAAATAAAACTTGGATTTTGTCATGGGCTGATACTCATACCAGTTTTGAACATGGTAGTGTTATATCTTATGTCCAGATTTGTAAGTATCCATCTAATGTTGTGACTGACATTACTAATGGTAATGGCTGTCACACTAATATGGCAGGGCCTGGTGCCACAACTTGTGATGTCATTCTTAGCTCACCACTTGAGTGTGTTCTTAATAGAACTTACTCACAACAGTATGCTGGTGTCTCCTATATTACTTGGTATAATGATCACATTATAGCATCTATCCAGGGTGAGGTCTTCACCTTTGATATTGGTGAAGTGCTGCAATGGTCTAATTTTAGTGCCTTTTGTGGTACCGGTAATAAGTGTGGTTTTAGTTATGCGACCACACTCTCTGAATGGTTGGTTAGGACTGATAATGATGGCACGGTTATTGATTATGTTATTTGTGATACTGACTTTGAAAGTCAGCTTAAGTGCAAGAATATGGTTTTTGAACTTACACCTGCTGTTTATTCGGGCTCTGCTGTTGAGTTACAATCCGCTATTTATTATGTTTCAAATGAGTTACCCGATTGTGACTTTTCATTTGCTGACATGTTTATGGACGGCACCGGAAATTTTGAAGGTCTCCGTAGACATGTTTTCAGCAACTGTTGGGTCAACTACACAGCATGGTTTGCATGCGCGGATGATTATTCCTGCATTATTTTTAATGCTATTTTTGCTGAGGTGCGTTATAAACTATCGCAGCCTGATGGTCTAGTTAATCCTTTCATTAAATGTAATGGATTGGACCTCTATTCTATCACTAAAGGCTGCTCTAGTGGCTTTGTTTTACGTTATCAGCTTTATGCTAATGGCAGTTTCGATGTTAATTCTTATACACCTGATTATATGGAATGTTTTGGTTATTTTGCGCTATATAATGGTTATGTTATTTACAACGCCAAGTTCGTTAGCAAGGGCTTGACTGTTTGTGTTGTACAGCCTGTCGAACCAGAACTTGACGTTTGTAAGTCTTATACTATAGACGGCGTGACATTCCAGGGCATTCTTAGAAATACAACACATCAGATTGATAGTTTTCATAATATTTTATATTATGGCGACATGGTCAGCTATGTGCGTATTAGGGGTGTTGTTTACGCTGTAGAGTCCTGCAATAGGTTTTATTATAGTGTTTTTAAGACCCTTTCTGCTATTGGTTATCTGTATTCAGGCGCCACGTGTGACTCCACTGATGTAACTACTTTTATGACTAAGGCTAGAGCTACAACATTTGTAGATAGTTCACTTGGTTGTTTTATAGACGTCAGTGTCACAGATGGTAATTATACTGATTGCTTAAACCCTATCGGAAATGGGTTCTGTGTTGATGTTAATGTTACTGGTCAACCAGTTGTTGGTAACATATTTATACAGACTCATGACACTGACTATGCTAGGCCAATTCTTACTGCCCAGCAAATAGAACTGCCTATTGACCATTATGTTAGTGTCAAAGAGCAGTTTATTCAAACTAGTACACCCAAGTTTGATGTTGATTGTGAAAGGTATATCTGCGATGTTTCCAGCGATTGCCGCGAATTGCTTGTTAAGTATGGTGGCTATTGTTCCAAAATACTTGCAGATATTAAATCTTCCAGCATTCAGCTGGATTATCAGATTTTGGGGCTTTACAAAACTTTAGCTGTTGATTTTAAGGTTCCTGATATTGATTTTGGTGACTTTAATTTTAGTATGTATATGTCTGAGGCCAATGGTAGATCTTTTATTGAGGATCTACTTTTTGATAAGATAGTTACTACGGGTCCAGGGTTTTATCAAGATTATTATGATTGTAAGAAGATGAATTTGCAAGATCTTACTTGCAAGCAGTATTATAATGGTATTATGGTTATACCACCTGTTATGGATGATACCTTGATCACGTTTTGGTCATCAGCCGTTGCTGGTTCCATGACTGCAGGCCTCTTTGGTGGTCAGGCAGGTATGGTTTCCTGGACTGTAGCACTTGCTGGCAGACTCAATGCGCTTGGCGTTATGCAGGATGCACTTGTTGAGGACGTTAATAAACTTGCTAATGGTTTTAACAACCTCACACAGTATGTGTCAGATGGCTTTAAAACCACCAGTCAAGCTCTCTCAACCATTCAGGCTGTTGTTAATAATAATGCACAGCAAGTTTCCCAGCTAGTCCAAGGGTTAAGCGAGAACTTCGGTGCTATTAGTAACAATTTTGCTCTTATTGCTGAGCGCCTTGAAAGGATAGAAGCCGCTATGCAGATGGACCGTCTTATTAATGGCCGTATGAATATATTACAGAATTTTGTCACCAATTATAAGCTTTCCATATCTGAGCTTAAATCTCAGCAAGCTCTTGCCCAGAGTCTTATTAATGAATGCGTTTATGCACAGAGCAGTAGGAATGGCTTTTGTGGTGATGGTTTGCACTTATTCTCACTGATGCAGCGTGCACCGGACGGAATAATGTTCTTCCATTACACACTTAAACCAAATAACACCATCATAGTCGAAACCACACCAGGACTCTGTTTGAGTAATGATGTTTGTATAGCTCCTAAAGATGGTTTATTTGTTAGACTTTCTACTGCCAGAGACACTGATTGGCATTTTACGACTCGCAACCGCTATAGTCCAGAACCAATAACGGTTAACAACACTCTCACTATTAGTGGCGGTGTTAATTTTACTGTTGTTAATTCTACTATAGATGGTATAGAGCCGCCAGCCAACCCATCTTTTGATGAGGAGTTTGCTGAGTTATATAAGAATGTTACATTAGAGCTCGAACAGCTTAAAAATATTAGTTTTGACCCCGAGATGCTTAATCTGACCTATTATATTGATAGGCTAGATGAGCTAGCAACAAATGTGTCGCAGCTCCACGTAGATGTTTCAGAGTTTAATAAATTTGTTCAGTATATTAAATGGCCTTGGTATGTTTGGCTAGCAATATTCCTTGTGCTTGTACTGTTCAGCTTCCTTATGCTCTGGTGTTGTTGCGCCACAGGTTGTTGCGGATGTTGTGGTCTTTGCGGTGCCGCTTGTAATGGATGTTGTACTAAACCTCAACCTATTGAATTTGAAAAGGTCCACGTACAATGA |