| Protein Id: AAL80031.1 |
Length: 1349 aa |
| Description: spike glycoprotein Porcine hemagglutinating encephalomyelitis |
Molecule type: linear |
| Data category: VRL |
Date: 23-Sep-02 |
| Source: Porcine hemagglutinating encephalomyelitis virus |
| Class virus: Coronaviridae |
Virus name: Porcine hemagglutinating encephalomyelitis |
| Host: -- |
Authors: Sasseville;A.M.; Boutin;M.; Gelinas;A.M. and Dea;S. |
| Title: Sequence of the 3'-terminal end (8.1 kb) of the genome of porcine haemagglutinating encephalomyelitis virus: comparison with other haemagglutinating coronaviruses |
Journal: J Gen Virol 83 (PT 10); 2411-2416 (2002) |
| Taxonomy: Porcine hemagglutinating encephalomyelitis virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus. |
| db_xref: """taxon:42005, CDD:293060, CDD:286493, CDD:279880, CDD:279881""" |
| Sequence: MFFILLISLPSAFAVIGDLKCTTSLINDVDTGVPSISSEVVDVTNGLGTFYVLDRVYLNTTLLLNGYYPISGATFRNMALKGTRLLSTLWFKPPFLSPFNDGIFAKVKNSRFSKDGVIYSEFPAITIGSTFVNTSYSIVVEPHTSLINGNLQGLLQISVCQYTMCEYPHTICHPNLGNQRIELWHYDTDVVSCLYRRNFTYDVNADYLYFHFYQEGGTFYAYFTDTGFVTKFLFKLYLGTVLSHYYVMPLTCNSALSLEYWVTPLTTRQFLLAFDQDGVLYHAVDCASDFMSEIMCKTSSITPPTGVYELNGYTVQPVATVYRRIPDLPNCDIEAWLNSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSFGCNNIDASRLYGMCFGSITIDKFAIPNSRKVDLQVGKSGYLQSFNYKIDTAVSSCQLYYSLPAANVSVTHYNPSSWNRRYGFNNQSFGSRGLHDAVYSQQCFNTPNTYCPCRTSQCIGGAGTGTCPVGTTVRKCFAAVTKATKCTCWCQPDPSTYKGVNAWTCPQSKVSIQPGQHCPGLGLVEDDCSGNPCTCKPQAFIGWSSETCLQNGRCNIFANFILNDVNSGTTCSTDLQQGNTIITTDVCVNYDLYGITGQGILIEVNATYYNSWQNLLYDSSGNLYGFRDYLSNRTFLIRSCYSGRVSAVFHANSSEPALMFRNLKCSHVFNNTILRQIQLVNYFDSYLGCVVNAYNNTASAVSTCDLTVGSGYCVDYVTALRSRRSFTTGYRFTNFEPFAANLVNDSIEPVGGLYEIQIPSEFTIGNLEEFIQTRSPKVTIDCATFVCGDYAACRQQLAEYGSFCENINAILTEVNELLDTTQLQVANSLMNGVTLSTKIKDGINFNVDDINFSPVLGCLGSECNRASTRSAIEDLLFDKVKLSDVGFVQAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAATAASLFPPWTAAAGVPFYLNVQYRINGLGVTMDVLSQNQKLIASAFNNALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAKAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAIEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDIGISPKSGYFINVNNSWMFTGSSYYYPEPITQNNVVVMSTCAVNYTKAPDLMLNTSTPNLPDFKEELYQWFKNQSSVAPDLSLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWLLIGLAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQEFVIKTSHDD |
Nucleotide
| Nucleotide_Id: AY078417.1 |
Length: 4050bp |
| Description: Porcine hemagglutinating encephalomyelitis virus hemagglutinin-esterase protein; spike glycoprotein; 4.9 kDa non-structural protein; 12.7 kDa non-structural protein; small envelope-associated protein; matrix glycoprotein; nucleocapsid protein; and N2 protein genes; complete cds |
Source: Porcine hemagglutinating encephalomyelitis virus |
| Nucleotide_type: RNA |
Molecule type: linear |
| Data category: VRL |
Date: 23-Sep-02 |
| Class virus: Coronaviridae |
Virus name: Porcine hemagglutinating encephalomyelitis |
| CDS: AY078417.1:1305..5354 |
Host: -- |
| Authors: Sasseville;A.M.; Boutin;M.; Gelinas;A.M. and Dea;S. |
Journal: J Gen Virol 83 (PT 10); 2411-2416 (2002) |
| Title: Sequence of the 3'-terminal end (8.1 kb) of the genome of porcine haemagglutinating encephalomyelitis virus: comparison with other haemagglutinating coronaviruses |
db_xref: taxon:42005 |
| Taxonomy: Porcine hemagglutinating encephalomyelitis virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(8123); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(15); ExactPosition(1290); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(1304); ExactPosition(5354); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(5343); ExactPosition(5406); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(5421); ExactPosition(5751); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(5737); ExactPosition(5992); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(6006); ExactPosition(6699); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(6708); ExactPosition(8058); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(6769); ExactPosition(7393); strand=1); type='CDS') |
| Sequence: ATGTTTTTTATACTTTTAATCTCCCTGCCTTCTGCTTTTGCAGTTATAGGGGATTTAAAGTGTACTACTTCATTAATTAATGACGTTGACACTGGTGTGCCATCTATTAGCTCTGAAGTTGTTGATGTCACTAATGGTTTGGGGACTTTCTATGTTTTAGATCGTGTCTATTTAAATACCACATTGTTGCTCAATGGTTATTACCCAATTTCAGGTGCTACATTTCGTAATATGGCTCTGAAAGGAACTCGATTATTGAGCACCTTGTGGTTTAAGCCGCCTTTTTTATCACCTTTTAATGATGGTATTTTTGCCAAGGTTAAAAACAGCAGATTTTCTAAAGATGGTGTTATTTATAGTGAGTTTCCTGCTATTACTATAGGTAGTACTTTTGTAAATACTTCCTATAGCATAGTAGTAGAGCCTCATACCTCACTTATTAATGGTAATTTACAAGGTTTGTTGCAAATTTCTGTTTGTCAATACACTATGTGTGAATACCCACATACTATTTGTCATCCTAATTTGGGTAATCAACGCATAGAATTATGGCATTATGACACAGATGTTGTTTCTTGTTTATACAGGCGTAATTTCACATATGATGTGAATGCTGATTATTTATATTTTCACTTTTATCAGGAAGGTGGCACTTTTTATGCATACTTTACAGATACTGGTTTTGTGACCAAGTTTCTGTTTAAGTTGTATTTAGGCACTGTGCTGTCACATTATTATGTTATGCCATTGACTTGTAATAGCGCTTTATCTTTAGAATACTGGGTTACACCTCTCACTACTAGACAATTTCTTCTAGCCTTTGACCAGGATGGTGTTTTATACCATGCTGTTGATTGTGCTAGTGATTTTATGAGTGAGATTATGTGTAAAACTTCTTCAATTACACCACCTACTGGTGTTTATGAACTAAACGGTTACACAGTTCAACCTGTTGCCACTGTATATCGTAGAATACCTGATTTACCCAATTGCGATATCGAAGCTTGGCTTAATTCTAAGACCGTTTCTTCGCCTCTTAATTGGGAACGTAAAATTTTTTCTAATTGTAATTTTAACATGGGCAGGCTGATGTCTTTTATTCAGGCTGACTCTTTTGGTTGTAACAATATTGATGCTTCTCGCTTATATGGTATGTGTTTTGGTAGCATTACTATTGATAAGTTTGCTATACCCAATAGTAGAAAGGTTGATCTGCAAGTGGGTAAATCTGGTTATTTACAATCTTTTAATTATAAGATTGACACTGCTGTTAGCAGTTGTCAACTCTATTATAGTTTGCCTGCAGCAAACGTATCTGTCACTCATTATAATCCTTCATCTTGGAATAGAAGGTATGGGTTTAATAATCAGAGTTTTGGTTCCAGAGGCCTTCATGATGCTGTTTATTCACAGCAATGTTTTAATACACCTAACACATATTGTCCTTGTAGAACAAGTCAATGCATAGGTGGTGCAGGCACAGGAACTTGTCCTGTAGGCACCACTGTGCGCAAGTGTTTTGCTGCAGTTACAAAAGCTACTAAGTGTACTTGCTGGTGTCAACCAGATCCTTCCACATATAAAGGTGTAAACGCCTGGACTTGTCCGCAATCTAAAGTTTCTATACAACCAGGTCAGCATTGCCCTGGTTTGGGTCTTGTGGAGGATGATTGCTCTGGCAACCCTTGCACTTGTAAACCACAGGCTTTCATAGGCTGGAGTTCAGAAACTTGTTTGCAAAATGGTAGGTGTAATATTTTTGCTAATTTTATTCTGAATGATGTTAATAGCGGTACAACCTGTTCTACTGATTTACAACAGGGTAATACTATTATTACTACTGATGTTTGTGTTAATTATGACCTATATGGCATTACAGGCCAGGGCATACTTATAGAAGTTAATGCCACTTATTATAATAGTTGGCAGAATCTTCTTTATGATTCTAGTGGTAATCTCTATGGCTTTAGAGATTATTTATCAAATAGAACTTTTCTTATTCGTAGCTGCTATAGTGGAAGAGTTTCAGCAGTTTTTCATGCTAACTCATCTGAACCAGCTTTGATGTTTCGTAATCTTAAATGCAGCCACGTTTTTAATAATACCATTTTAAGACAAATACAGCTTGTTAACTATTTTGATAGTTACCTTGGTTGTGTTGTTAATGCTTATAATAATACAGCTAGTGCTGTAAGTACTTGTGATTTAACCGTTGGTAGCGGCTATTGTGTTGATTATGTTACAGCACTTAGATCACGTAGATCTTTTACTACAGGTTATCGCTTTACTAATTTTGAACCATTTGCCGCTAATTTGGTAAATGATAGTATAGAACCTGTTGGTGGTTTGTATGAAATACAGATACCTTCAGAGTTTACCATTGGTAATTTAGAAGAGTTCATTCAAACGAGATCCCCTAAGGTTACTATAGACTGTGCTACATTTGTTTGTGGTGACTATGCAGCATGTAGACAACAGTTAGCTGAGTATGGTAGTTTTTGTGAGAACATTAATGCTATACTCACAGAAGTAAATGAACTACTTGACACTACACAGTTGCAAGTAGCTAATAGTTTAATGAATGGAGTCACCCTTAGTACCAAGATTAAGGATGGCATTAATTTCAATGTTGACGATATCAACTTCTCCCCTGTATTAGGTTGTTTAGGAAGCGAATGTAATAGAGCTTCCACTAGATCTGCTATAGAGGATTTACTTTTTGATAAAGTAAAATTGTCTGATGTCGGCTTTGTACAGGCCTATAATAACTGCACTGGAGGTGCCGAAATTAGGGATCTCATTTGTGTGCAAAGTTATAATGGTATCAAAGTGTTGCCTCCATTGTTATCTGAAAATCAGATCAGTGGCTACACTTTGGCAGCCACCGCTGCTAGCTTATTCCCTCCTTGGACAGCTGCAGCAGGTGTACCATTTTATTTAAATGTTCAGTATCGTATAAATGGGCTTGGCGTCACTATGGATGTGCTAAGTCAAAACCAAAAGCTTATTGCTAGTGCATTTAACAATGCTCTTGATGCTATCCAGGAAGGGTTCGACGCAACCAATTCTGCTTTAGTTAAAATTCAGGCTGTTGTTAATGCAAATGCTGAAGCACTTAATAACTTATTGCAGCAACTCTCTAACAGATTTGGTGCCATAAGTGCCTCTTTACAAGAAATTTTATCCAGGCTCGATGCTCTTGAAGCTAAAGCTCAGATAGACAGACTTATCAATGGGCGTCTCACCGCTCTTAATGCTTATGTTTCTCAGCAGCTTAGTGATTCTACACTAGTAAAATTTAGTGCAGCACAAGCTATTGAGAAAGTTAATGAATGTGTTAAAAGCCAATCATCTAGGATAAATTTCTGTGGTAATGGTAATCATATTATATCATTAGTACAGAATGCTCCATATGGTTTGTATTTTATCCATTTTAGCTATGTCCCCACCAAGTATGTTACAGCAAAGGTTAGTCCTGGTTTGTGCATTGCTGGCGATATAGGAATATCGCCTAAGAGTGGTTATTTTATTAATGTAAATAATTCTTGGATGTTCACTGGTAGTAGCTATTACTACCCTGAACCTATAACCCAAAATAATGTTGTTGTGATGAGTACCTGTGCTGTTAATTATACTAAAGCACCGGATCTAATGCTGAACACATCGACACCCAACCTTCCTGACTTCAAGGAAGAATTGTATCAATGGTTTAAAAACCAATCTTCAGTGGCACCAGATTTGTCACTTGATTATATTAATGTTACGTTCTTGGACCTACAAGATGAAATGAATAGGTTACAAGAGGCTATAAAAGTTTTAAATCAGAGCTACATCAATCTCAAGGACATTGGTACATATGAGTATTATGTGAAATGGCCTTGGTATGTATGGCTTTTAATTGGCCTTGCTGGTGTAGCTATGCTTGTTTTACTATTCTTCATATGCTGCTGTACAGGATGTGGGACTAGTTGTTTTAAGAAATGTGGCGGTTGTTGTGATGATTATACTGGACACCAGGAGTTTGTAATCAAAACTTCACATGACGATTAA |