| Protein Id: AAR87523.1 |
Length: 1255 aa |
| Description: putative spike glycoprotein SARS coronavirus TW2. |
Molecule type: linear |
| Data category: VRL |
Date: 25-Feb-04 |
| Source: SARS coronavirus TW2 |
| Class virus: Coronaviridae |
Virus name: SARS coronavirus |
| Host: -- |
Authors: Yeh;S.H.; Wang;H.Y.; Tsai;C.Y.; Kao;C.L.; Yang;J.Y.; Liu;H.W.; Su;I.J.; Tsai;S.F.; Chen;D.S. and Chen;P.J. CONSRTM National Taiwan University SARS Research Team |
| Title: Characterization of severe acute respiratory syndrome coronavirus genomes in Taiwan: molecular epidemiology and genome evolution |
Journal: Proc Natl Acad Sci U S A 101 (8); 2542-2547 (2004) |
| Taxonomy: SARS coronavirus TW2 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus. |
| db_xref: """taxon:258965, CDD:370471, CDD:279881""" |
| Sequence: MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT |
Nucleotide
| Nucleotide_Id: AY502925.1 |
Length: 3768bp |
| Description: SARS coronavirus TW2; complete genome |
Source: SARS coronavirus TW2 |
| Nucleotide_type: RNA |
Molecule type: linear |
| Data category: VRL |
Date: 25-Feb-04 |
| Class virus: Coronaviridae |
Virus name: SARS coronavirus |
| CDS: AY502925.1:21492..25259 |
Host: -- |
| Authors: Yeh;S.H.; Wang;H.Y.; Tsai;C.Y.; Kao;C.L.; Yang;J.Y.; Liu;H.W.; Su;I.J.; Tsai;S.F.; Chen;D.S. and Chen;P.J. CONSRTM National Taiwan University SARS Research Team |
Journal: Proc Natl Acad Sci U S A 101 (8); 2542-2547 (2004) |
| Title: Characterization of severe acute respiratory syndrome coronavirus genomes in Taiwan: molecular epidemiology and genome evolution |
db_xref: taxon:258965 |
| Taxonomy: SARS coronavirus TW2 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(29729); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(20); strand=1); type='primer_bind'); SeqFeature(CompoundLocation(FeatureLocation(ExactPosition(264); ExactPosition(13398); strand=1); FeatureLocation(ExactPosition(13397); ExactPosition(21485); strand=1); 'join'); type='CDS'; location_operator='join'); SeqFeature(FeatureLocation(ExactPosition(264); ExactPosition(801); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(801); ExactPosition(2718); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(2718); ExactPosition(9984); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(9984); ExactPosition(10902); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(10902); ExactPosition(11772); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(11772); ExactPosition(12021); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(12021); ExactPosition(12615); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(12615); ExactPosition(12954); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(12954); ExactPosition(13371); strand=1); type='mat_peptide'); SeqFeature(CompoundLocation(FeatureLocation(ExactPosition(13371); ExactPosition(13398); strand=1); FeatureLocation(ExactPosition(13397); ExactPosition(16166); strand=1); 'join'); type='mat_peptide'; location_operator='join'); SeqFeature(FeatureLocation(ExactPosition(16166); ExactPosition(17969); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(17969); ExactPosition(19550); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(19550); ExactPosition(20588); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(20588); ExactPosition(21482); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(264); ExactPosition(13413); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(21491); ExactPosition(25259); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25267); ExactPosition(26092); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25688); ExactPosition(26153); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(26116); ExactPosition(26347); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(26397); ExactPosition(27063); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27073); ExactPosition(27265); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27272); ExactPosition(27641); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28119); ExactPosition(29388); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28129); ExactPosition(28426); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(29709); ExactPosition(29729); strand=-1); type='primer_bind') |
| Sequence: ATGTTTATTTTCTTATTATTTCTTACTCTCACTAGTGGTAGTGACCTTGACCGGTGCACCACTTTTGATGATGTTCAAGCTCCTAATTACACTCAACATACTTCATCTATGAGGGGGGTTTACTATCCTGATGAAATTTTTAGATCAGACACTCTTTATTTAACTCAGGATTTATTTCTTCCATTTTATTCTAATGTTACAGGGTTTCATACTATTAATCATACGTTTGGCAACCCTGTCATACCTTTTAAGGATGGTATTTATTTTGCTGCCACAGAGAAATCAAATGTTGTCCGTGGTTGGGTTTTTGGTTCTACCATGAACAACAAGTCACAGTCGGTGATTATTATTAACAATTCTACTAATGTTGTTATACGAGCATGTAACTTTGAATTGTGTGACAACCCTTTCTTTGCTGTTTCTAAACCCATGGGTACACAGACACATACTATGATATTCGATAATGCATTTAATTGCACTTTCGAGTACATATCTGATGCCTTTTCGCTTGATGTTTCAGAAAAGTCAGGTAATTTTAAACACTTACGAGAGTTTGTGTTTAAAAATAAAGATGGGTTTCTCTATGTTTATAAGGGCTATCAACCTATAGATGTAGTTCGTGATCTACCTTCTGGTTTTAACACTTTGAAACCTATTTTTAAGTTGCCTCTTGGTATTAACATTACAAATTTTAGAGCCATTCTTACAGCCTTTTCACCTGCTCAAGACATTTGGGGCACGTCAGCTGCAGCCTATTTTGTTGGCTATTTAAAGCCAACTACATTTATGCTCAAGTATGATGAAAATGGTACAATCACAGATGCTGTTGATTGTTCTCAAAATCCACTTGCTGAACTCAAATGCTCTGTTAAGAGCTTTGAGATTGACAAAGGAATTTACCAGACCTCTAATTTCAGGGTTGTTCCCTCAGGAGATGTTGTGAGATTCCCTAATATTACAAACTTGTGTCCTTTTGGAGAGGTTTTTAATGCTACTAAATTCCCTTCTGTCTATGCATGGGAGAGAAAAAAAATTTCTAATTGTGTTGCTGATTACTCTGTGCTCTACAACTCAACATTTTTTTCAACCTTTAAGTGCTATGGCGTTTCTGCCACTAAGTTGAATGATCTTTGCTTCTCCAATGTCTATGCAGATTCTTTTGTAGTCAAGGGAGATGATGTAAGACAAATAGCGCCAGGACAAACTGGTGTTATTGCTGATTATAATTATAAATTGCCAGATGATTTCATGGGTTGTGTCCTTGCTTGGAATACTAGGAACATTGATGCTACTTCAACTGGTAATTATAATTATAAATATAGGTATCTTAGACATGGCAAGCTTAGGCCCTTTGAGAGAGACATATCTAATGTGCCTTTCTCCCCTGATGGCAAACCTTGCACCCCACCTGCTCTTAATTGTTATTGGCCATTAAATGATTATGGTTTTTACACCACTACTGGCATTGGCTACCAACCTTACAGAGTTGTAGTACTTTCTTTTGAACTTTTAAATGCACCGGCCACGGTTTGTGGACCAAAATTATCCACTGACCTTATTAAGAACCAGTGTGTCAATTTTAATTTTAATGGACTCACTGGTACTGGTGTGTTAACTCCTTCTTCAAAGAGATTTCAACCATTTCAACAATTTGGCCGTGATGTTTCTGATTTCACTGATTCCGTTCGAGATCCTAAAACATCTGAAATATTAGACATTTCACCTTGCTCTTTTGGGGGTGTAAGTGTAATTACACCTGGAACAAATGCTTCATCTGAAGTTGCTGTTCTATATCAAGATGTTAACTGCACTGATGTTTCTACAGCAATTCATGCAGATCAACTCACACCAGCTTGGCGCATATATTCTACTGGAAACAATGTATTCCAGACTCAAGCAGGCTGTCTTATAGGAGCTGAGCATGTCGACACTTCTTATGAGTGCGACATTCCTATTGGAGCTGGCATTTGTGCTAGTTACCATACAGTTTCTTTATTACGTAGTACTAGCCAAAAATCTATTGTGGCTTATACTATGTCTTTAGGTGCTGATAGTTCAATTGCTTACTCTAATAACACCATTGCTATACCTACTAACTTTTCAATTAGCATTACTACAGAAGTAATGCCTGTTTCTATGGCTAAAACCTCCGTAGATTGTAATATGTACATCTGCGGAGATTCTACTGAATGTGCTAATTTGCTTCTCCAATATGGTAGCTTTTGCACACAACTAAATCGTGCACTCTCAGGTATTGCTGCTGAACAGGATCGCAACACACGTGAAGTGTTCGCTCAAGTCAAACAAATGTACAAAACCCCAACTTTGAAATATTTTGGTGGTTTTAATTTTTCACAAATATTACCTGACCCTCTAAAGCCAACTAAGAGGTCTTTTATTGAGGACTTGCTCTTTAATAAGGTGACACTCGCTGATGCTGGCTTCATGAAGCAATATGGCGAATGCCTAGGTGATATTAATGCTAGAGATCTCATTTGTGCGCAGAAGTTCAATGGACTTACAGTGTTGCCACCTCTGCTCACTGATGATATGATTGCTGCCTACACTGCTGCTCTAGTTAGTGGTACTGCCACTGCTGGATGGACATTTGGTGCTGGCGCTGCTCTTCAAATACCTTTTGCTATGCAAATGGCATATAGGTTCAATGGCATTGGAGTTACCCAAAATGTTCTCTATGAGAACCAAAAACAAATCGCCAACCAATTTAACAAGGCGATTAGTCAAATTCAAGAATCACTTACAACAACATCAACTGCATTGGGCAAGCTGCAAGACGTTGTTAACCAGAATGCTCAAGCATTAAACACACTTGTTAAACAACTTAGCTCTAATTTTGGTGCAATTTCAAGTGTGCTAAATGATATCCTTTCGCGACTTGATAAAGTCGAGGCGGAGGTACAAATTGACAGGTTAATTACAGGCAGACTTCAAAGCCTTCAAACCTATGTAACACAACAACTAATCAGGGCTGCTGAAATCAGGGCTTCTGCTAATCTTGCTGCTACTAAAATGTCTGAGTGTGTTCTTGGACAATCAAAAAGAGTTGACTTTTGTGGAAAGGGCTACCACCTTATGTCCTTCCCACAAGCAGCCCCGCATGGTGTTGTCTTCCTACATGTCACGTATGTGCCATCCCAGGAGAGGAACTTCACCACAGCGCCAGCAATTTGTCATGAAGGCAAAGCATACTTCCCTCGTGAAGGTGTTTTTGTGTTTAATGGCACTTCTTGGTTTATTACACAGAGGAACTTCTTTTCTCCACAAATAATTACTACAGACAATACATTTGTCTCAGGAAATTGTGATGTCGTTATTGGCATCATTAACAACACAGTTTATGATCCTCTGCAACCTGAGCTTGACTCATTCAAAGAAGAGCTGGACAAGTACTTCAAAAATCATACATCACCAGATGTTGATCTTGGCGACATTTCAGGCATTAACGCTTCTGTCGTCAACATTCAAAAAGAAATTGACCGCCTCAATGAGGTCGCTAAAAATTTAAATGAATCACTCATTGACCTTCAAGAATTGGGAAAATATGAGCAATATATTAAATGGCCTTGGTATGTTTGGCTCGGCTTCATTGCTGGACTAATTGCCATCGTCATGGTTACAATCTTGCTTTGTTGCATGACTAGTTGTTGCAGTTGCCTCAAGGGTGCATGCTCTTGTGGTTCTTGCTGCAAGTTTGATGAGGATGACTCTGAGCCAGTTCTCAAGGGTGTCAAATTACATTACACATAA |