| Protein Id: YP_009755839.1 |
Length: 1221 aa |
| Description: spike glycoprotein Shrew coronavirus. |
Molecule type: linear |
| Data category: VRL |
Date: 12-Apr-20 |
| Source: Shrew coronavirus |
| Class virus: Coronaviridae |
Virus name: Shrew coronavirus |
| Host: Sorex araneus |
Authors: Wu;Z.; Lu;L.; Du;J.; Yang;L.; Ren;X.; Liu;B.; Jiang;J.; Yang;J.; Dong;J.; Sun;L.; Zhu;Y.; Li;Y.; Zheng;D.; Zhang;C.; Su;H.; Zheng;Y.; Zhou;H.; Zhu;G.; Li;H.; Chmura;A.; Yang;F.; Daszak;P.; Wang;J.; Liu;Q. and Jin;Q. |
| Title: Comparative analysis of rodent and small mammal viromes to better understand the wildlife origin of emerging infectious diseases |
Journal: Microbiome 6 (1); 178 (2018) |
| Taxonomy: Shrew coronavirus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; unclassified Orthocoronavirinae. |
| db_xref: """taxon:2050019, GeneID:54124711""" |
| Sequence: MLILVFLSLVTVSLQNVVVPFDNYCNLDARYHNITVQSEKPFNFNATFYTTNQTCFDVNCTSSNTSNTFNSSDTITYSNCSSVTFNGCVVKQFCVTQPCHCYYQTQQVSGFVFDGLSHTFVPEISNYHVADVVNKTLTRTTNLCSSVNVTIDYKQFLMLSSVEINSTFVVTQFVPSYVYNQDNFTIKGDNFWVVANTTTVFVLQPKTPSNETLSLYIKITNSSGSLFVNVTICNYFRVLNNTDNTNTSSLVYTNCVFEKVAGGLQVVTLGVIWRKNVVTLHWLAQEVVTIELPFDPQWYGGDPALNGLYCNGWYANSLESPHTYLLKTNASGHIVNSLWCNPDDELSSLQCAYKTFNLNRGVYSRTVHQKVVYLQRFSSTPKCVTNKVNADLVVRGGFYATLTNCDYDLHGLLNISLLPQRWGGVNYTIPPVVVPWVLKNPDGTSRLWQQCVGVDVASANTQCFKSISVSFVTNAYLLELLPGQCVSYYGYFTTGAAGLVAKNAIVGTFDLSSGDTQTCMYQQQNTTFEIPQNVCVSFTFDSQTIKGILTQFNTTYPSNYTNILKHNGVVKYVRIDGVSYVVKPCLFESVVKIVNNATYNHTIISTSLCGENGTNTTIGCIQTGFVNETLNTCDYSLGNGFCANVNKSMDVYKFIPSKQTNDYVVPISGMYNITLPTSYEPFTSTAYYQTRLEKLQVDCQHFVCDSNIHCLTLLQKYGDICTKITGDVNTVMASLTSLELDALQTVALEGLNVDYGSFNFSGLMPQRGTRSFIEDLLFDKIVTTGPQFYKDYYDCHKDKTINDLLCAQQYNGMLVVPPIMDDATIAMYGTIAGASVSAGMFGGQAGMITWNTAVSARLNALGITQEVMQSDIQKIANAVNGIVDHVSNLAKTVAGGFEVIQAVVNQNGAQMMALVDGLQENFGAISNNFETINNRLNKLEADQQMDRLINGRLNVLQSFMTNYKIKVSAMQATQHTVNSIIKECVYAQSTRNGFCGDGKHIMSFMQNAPDGIFFIHFTMKPVQYINVTTTPGLCINNTGIAPKDGIFVFVNGTWMVSPRNIYNPRNVSNSDIVHYISCEANYTLVNNTIGSVVLPQLPNIGDDFNNLYENTSKALEEIKNIYFNFTNLNLTTEIERLNSIAEEVKKLNITLSELGRYERYVKWPWYVWLAIAVVMIVLVFILGCLLFMTGCCGCCGCCGGCCGKACSKPPDYEELEKLHVA |
Nucleotide
| Nucleotide_Id: NC_046955.1 |
Length: 3666bp |
| Description: Shrew coronavirus isolate Shrew-CoV/Tibet2014 ORF1ab polyprotein; spike glycoprotein; envelope protein; membrane protein; and nucleocapsid protein genes; complete cds |
Source: Shrew coronavirus |
| Nucleotide_type: RNA |
Molecule type: linear |
| Data category: VRL |
Date: 12-Apr-20 |
| Class virus: Coronaviridae |
Virus name: Shrew coronavirus |
| CDS: NC_046955.1:19485..23150 |
Host: Sorex araneus |
| Authors: Wu;Z.; Lu;L.; Du;J.; Yang;L.; Ren;X.; Liu;B.; Jiang;J.; Yang;J.; Dong;J.; Sun;L.; Zhu;Y.; Li;Y.; Zheng;D.; Zhang;C.; Su;H.; Zheng;Y.; Zhou;H.; Zhu;G.; Li;H.; Chmura;A.; Yang;F.; Daszak;P.; Wang;J.; Liu;Q. and Jin;Q. |
Journal: Microbiome 6 (1); 178 (2018) |
| Title: Comparative analysis of rodent and small mammal viromes to better understand the wildlife origin of emerging infectious diseases |
db_xref: taxon:2050019; GeneID:54124715; GeneID:54124715; GeneID:54124711; GeneID:54124711; GeneID:54124712; GeneID:54124712; GeneID:54124713; GeneID:54124713; GeneID:54124714; GeneID:54124714 |
| Taxonomy: Shrew coronavirus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; unclassified Orthocoronavirinae. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(27102); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(339); ExactPosition(19484); strand=1); type='gene'); SeqFeature(CompoundLocation(FeatureLocation(ExactPosition(339); ExactPosition(11490); strand=1); FeatureLocation(ExactPosition(11489); ExactPosition(19484); strand=1); 'join'); type='CDS'; location_operator='join'); SeqFeature(FeatureLocation(ExactPosition(19484); ExactPosition(23150); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(19484); ExactPosition(23150); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(24613); ExactPosition(24850); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(24613); ExactPosition(24850); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(24856); ExactPosition(25546); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(24856); ExactPosition(25546); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25564); ExactPosition(26770); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25564); ExactPosition(26770); strand=1); type='CDS') |
| Sequence: ATGTTGATACTAGTTTTCTTATCACTTGTCACAGTATCATTACAAAATGTTGTGGTTCCTTTTGATAATTATTGCAACTTGGATGCACGTTATCACAATATTACTGTTCAGAGTGAAAAACCCTTTAATTTCAATGCAACATTTTACACCACCAATCAAACTTGTTTTGATGTTAACTGCACTAGTAGTAATACTTCAAACACCTTTAATAGTAGCGATACAATTACTTATAGCAATTGTAGCAGTGTTACTTTCAATGGTTGTGTTGTGAAGCAGTTTTGTGTTACACAACCGTGTCATTGTTATTATCAAACCCAACAAGTGTCGGGTTTTGTGTTTGATGGGTTATCACACACTTTTGTGCCAGAAATTAGTAATTACCATGTTGCAGATGTCGTGAATAAAACTCTTACACGAACAACTAACCTGTGTAGTTCTGTTAATGTTACTATTGACTATAAACAATTTTTAATGTTGTCATCAGTAGAAATTAACTCTACGTTTGTTGTGACACAATTTGTGCCATCATATGTTTACAATCAAGACAATTTTACAATTAAAGGTGATAATTTTTGGGTGGTTGCCAATACGACAACTGTTTTTGTTTTACAACCCAAAACACCTTCAAATGAAACATTGTCTTTGTATATTAAAATTACCAATAGTAGTGGTAGTTTGTTTGTTAATGTTACAATTTGTAATTATTTTAGAGTTCTTAACAATACTGACAATACAAACACATCTAGTTTGGTGTATACAAATTGTGTGTTTGAGAAGGTTGCAGGTGGTTTGCAAGTTGTAACATTAGGTGTTATTTGGAGAAAGAACGTTGTAACATTGCATTGGCTAGCACAGGAAGTTGTTACAATAGAATTACCTTTTGATCCACAGTGGTATGGTGGAGACCCTGCATTAAATGGATTATATTGTAATGGGTGGTATGCAAATTCACTTGAGTCTCCACATACTTATTTGTTAAAAACAAACGCAAGTGGTCATATTGTTAATAGTCTTTGGTGCAACCCAGATGATGAATTGTCATCATTACAGTGTGCTTATAAAACATTTAATTTAAATAGGGGTGTTTACTCTAGAACAGTTCATCAGAAAGTTGTTTATTTACAAAGGTTTTCATCCACACCAAAGTGTGTTACAAACAAAGTAAATGCGGACTTAGTGGTAAGAGGAGGTTTTTATGCGACTCTAACCAATTGTGATTATGATTTGCATGGTTTGTTGAACATATCACTATTGCCACAGAGGTGGGGTGGTGTTAATTACACCATACCTCCTGTTGTAGTGCCATGGGTTTTAAAAAACCCTGATGGTACCAGTAGACTATGGCAACAGTGTGTGGGTGTTGATGTTGCATCTGCCAATACACAGTGTTTTAAATCTATTAGTGTTAGTTTTGTAACTAATGCTTATTTGTTAGAACTGTTACCCGGTCAGTGTGTGTCTTATTATGGCTATTTCACCACTGGTGCAGCAGGTTTGGTTGCTAAAAACGCAATTGTTGGCACATTTGACTTGTCTAGTGGTGACACACAAACATGTATGTACCAACAACAAAACACAACTTTTGAAATCCCCCAAAATGTTTGTGTTTCTTTTACGTTTGACTCACAAACAATTAAAGGAATTTTGACACAGTTTAACACAACTTACCCATCTAATTACACCAACATTTTGAAACACAATGGTGTTGTTAAATATGTTAGAATTGATGGTGTTAGTTATGTAGTTAAACCCTGTTTGTTTGAATCTGTTGTTAAAATAGTTAATAACGCCACTTATAACCACACTATTATAAGTACATCACTTTGTGGGGAAAATGGCACCAATACCACTATAGGTTGTATACAAACAGGTTTTGTTAATGAAACATTGAACACATGTGATTACTCTTTGGGTAATGGATTTTGTGCAAATGTTAATAAATCTATGGATGTGTACAAGTTTATTCCTAGTAAACAAACCAATGATTATGTGGTGCCAATTTCAGGTATGTATAATATAACCTTGCCAACCAGTTATGAACCTTTTACTAGTACTGCTTATTACCAAACTCGTTTGGAAAAATTGCAAGTGGATTGCCAACACTTTGTGTGTGACTCAAACATACATTGTTTGACGTTGTTACAGAAGTATGGTGACATTTGCACAAAAATTACTGGTGATGTCAACACAGTAATGGCATCTTTAACTAGTTTAGAACTTGATGCATTACAAACTGTAGCTCTAGAGGGGCTCAATGTTGATTATGGTTCATTTAATTTTAGCGGGTTAATGCCACAAAGAGGTACACGCAGTTTTATAGAAGACCTTTTGTTTGACAAAATTGTTACCACAGGTCCACAATTTTACAAAGATTATTATGATTGTCACAAGGATAAAACTATTAATGATTTGCTTTGTGCACAACAGTACAATGGTATGTTAGTAGTTCCACCTATTATGGATGATGCTACTATCGCCATGTATGGCACCATTGCAGGAGCATCTGTGTCAGCAGGCATGTTTGGTGGCCAAGCAGGTATGATTACGTGGAATACAGCTGTGAGTGCTCGGTTGAATGCACTCGGGATTACACAAGAAGTTATGCAAAGTGATATACAAAAGATTGCTAATGCAGTTAATGGTATTGTAGACCATGTTTCTAATTTGGCCAAAACAGTAGCAGGAGGATTTGAAGTTATACAGGCAGTTGTTAACCAAAATGGTGCTCAGATGATGGCACTTGTTGATGGTTTGCAAGAAAACTTTGGTGCAATTTCTAATAATTTTGAGACTATAAACAACCGCTTAAACAAGTTGGAAGCTGACCAGCAAATGGATAGGCTTATAAATGGTAGGTTAAATGTTTTACAGTCATTTATGACCAATTATAAGATAAAAGTGTCAGCAATGCAGGCCACACAACATACTGTTAATTCTATTATTAAAGAGTGTGTGTATGCACAGTCTACAAGAAATGGGTTTTGTGGTGATGGCAAACATATTATGAGTTTTATGCAGAATGCACCTGATGGTATTTTCTTTATACATTTCACAATGAAACCTGTGCAATATATTAATGTCACTACTACACCAGGATTATGTATTAACAACACAGGCATTGCACCAAAAGATGGTATTTTTGTGTTTGTTAATGGAACATGGATGGTCTCACCTAGGAACATTTATAATCCAAGAAATGTGTCTAATAGTGATATTGTACATTATATAAGTTGTGAGGCAAATTACACACTTGTTAACAACACTATAGGTAGTGTTGTGTTGCCACAGCTACCCAATATTGGTGATGATTTTAACAACCTTTATGAAAACACATCAAAGGCCTTAGAAGAAATTAAAAATATATATTTTAATTTTACAAATTTGAATTTGACCACTGAAATAGAAAGGTTGAATTCCATAGCAGAAGAAGTTAAGAAGTTAAATATTACCTTATCAGAACTTGGTAGGTATGAAAGGTATGTTAAATGGCCTTGGTATGTGTGGTTGGCAATTGCAGTTGTTATGATTGTTTTAGTTTTTATTTTAGGGTGTTTGTTATTTATGACTGGTTGCTGCGGATGTTGTGGTTGCTGTGGCGGTTGTTGTGGCAAAGCTTGCTCCAAACCGCCTGATTATGAGGAATTAGAAAAATTGCATGTTGCATAA |