| Protein Id: AAQ02624.1 |
Length: 1449 aa |
| Description: spike glycoprotein Transmissible gastroenteritis virus. |
Molecule type: linear |
| Data category: VRL |
Date: 3-Aug-03 |
| Source: Transmissible gastroenteritis virus |
| Class virus: Coronaviridae |
Virus name: Transmissible gastroenteritis virus |
| Host: swine |
Authors: Cheng;J.; Liu;J.X. and Wu;R. |
| Title: Cloning and Characterization Analysis on Structural Protein Gene of Porcine Transmissible Gastroenteritis Virus |
Journal: Unpublished |
| Taxonomy: Transmissible gastroenteritis virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Alphacoronavirus; Tegacovirus. |
| db_xref: """taxon:11149, CDD:279880, CDD:279881""" |
| Sequence: MKKLFVVLVVMPLIYGDNFPCSKLTNRTIGNHWNLIETFLLNYSSRLSPNSDVVLGDYFPTVQPWFNCIRNNSNDLYVTLENLKALYWDYATENITWNHKQRLNVVVNGYPYSITVTTTRNFNSAEGAIICICKGSPPTTTTESSLTCNWGSECRLNHKFPICPSNSEANCGNMLYGLQWFADAVVAYLHGASYRISFENQWSGTVTLGDMRATTLETAGTLVDLWWFNPVYDVSYYRVNNKNGTTVVSNCTDQCASYVANVFTTQPGGFIPSDFSFNNWFLLTNSSTLVSGKLVTKQPLLVNCLWPVPSFEEAASTFCFEGAGFDQCNGAVLNNTVDVIRFNLNFTTNVQSGKGATVFSLNTTGGVTLEISCYNDTVSDSSFSSYGEMPFGVTDGPRYCYVLYNGTALKYLGTLPPIVKEIAISKWGHFYINGYNFFSTFPIDCISFNLTTGDSDVFWTIAYTSYTEALVQVENTAITKVTYCNSYVNNIKCSQLTANLNNGFYPVSSSEVGLVNKSVVLLPSFYTHTIVNITIGLGMKRSGYGQPIASTLSNITLPMQDNNTDVYCIRSDQFSVCVHSTCKSSLWDNVFKRNCTDVLDATAVIKTGTCPFSFDKLNNYLTFNKFCLSLSPVGANCKFDVAARTRTNDQVVRSLYVIYEEGDNIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGFKNVSDGVIYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTTTPNFYYYSIYNYTNDRTRGTAIDSNDVDCEPVITYSNIGVCKNGALVFINVTHSDGDVQPISTGNVTIPTNFTISVQVEYIQVYTTPVSMDCSRYVCNGNPRCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPNIGGSWLEGLKYILPSDNSKRKYRSAIEDLLFAKVVTSGLGTVDEDYKRCTGGYGIADLVCAQYYNGIMVLPGVANADKMTMYTASLTGGITLGALGGGAVAIPFAVAVQARLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQDVVNTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTAWAGICALDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLFVNATASDLPSIIPDYIDINQTVQDILENFRPNWTVPELTFDIFNATYLNLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWLLIGLVVIFCVPLLLFCCCGTGCCGCIGCLGSCCHSICSRRQFENYEPIEKVHVH |
Nucleotide
| Nucleotide_Id: AY335549.1 |
Length: 4350bp |
| Description: Transmissible gastroenteritis virus spike glycoprotein (S); small membrane protein (sM); integral membrane protein (M); and nucleocapsid protein (N) genes; complete cds |
Source: Transmissible gastroenteritis virus |
| Nucleotide_type: RNA |
Molecule type: linear |
| Data category: VRL |
Date: 3-Aug-03 |
| Class virus: Coronaviridae |
Virus name: Transmissible gastroenteritis virus |
| CDS: AY335549.1:1..4350 |
Host: swine |
| Authors: Cheng;J.; Liu;J.X. and Wu;R. |
Journal: Unpublished |
| Title: Cloning and Characterization Analysis on Structural Protein Gene of Porcine Transmissible Gastroenteritis Virus |
db_xref: taxon:11149 |
| Taxonomy: Transmissible gastroenteritis virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Alphacoronavirus; Tegacovirus. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(6617); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(4350); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(4350); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(4399); ExactPosition(4648); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(4399); ExactPosition(4648); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(4658); ExactPosition(5447); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(4658); ExactPosition(5447); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(5459); ExactPosition(6608); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(5459); ExactPosition(6608); strand=1); type='CDS') |
| Sequence: ATGAAAAAATTATTTGTGGTTTTGGTTGTAATGCCATTGATTTATGGAGACAATTTTCCTTGTTCTAAATTGACTAATAGAACTATAGGTAACCATTGGAATCTCATTGAAACCTTCCTTCTAAATTATAGTAGTAGGTTATCACCTAATTCAGATGTGGTGTTAGGTGATTATTTTCCTACTGTACAACCTTGGTTTAATTGCATTCGCAATAATAGTAATGACCTTTATGTTACATTGGAAAATCTTAAAGCATTGTATTGGGATTATGCTACAGAAAATATCACTTGGAATCACAAACAACGGTTAAACGTAGTCGTTAATGGATACCCATACTCCATCACAGTTACAACAACCCGCAATTTTAATTCTGCTGAAGGTGCTATTATATGCATTTGCAAGGGCTCACCACCTACTACCACCACAGAATCTAGTTTGACTTGCAATTGGGGTAGTGAGTGCAGGTTAAACCATAAGTTCCCTATATGTCCTTCTAATTCAGAGGCAAATTGTGGTAATATGCTGTATGGCCTACAATGGTTTGCAGATGCGGTTGTTGCTTATTTACATGGTGCTAGTTACCGTATTAGTTTTGAAAATCAATGGTCTGGCACTGTTACACTTGGTGATATGCGTGCGACTACATTAGAAACCGCTGGCACGCTTGTAGACCTTTGGTGGTTTAATCCTGTTTATGATGTCAGTTATTATAGAGTTAATAATAAAAATGGTACTACCGTAGTTTCCAATTGCACTGATCAATGTGCTAGTTATGTGGCTAATGTTTTTACTACACAGCCAGGAGGCTTTATACCATCAGATTTTAGTTTTAATAATTGGTTCCTTCTAACTAATAGCTCCACGTTGGTTAGTGGTAAATTAGTTACCAAACAGCCGTTATTAGTTAATTGCTTATGGCCAGTCCCTAGCTTTGAAGAAGCAGCTTCTACATTTTGTTTTGAAGGTGCTGGCTTTGATCAATGTAATGGTGCTGTTTTAAATAACACTGTAGACGTCATCAGGTTTAACCTTAATTTTACTACAAATGTACAATCAGGTAAGGGTGCCACAGTGTTTTCATTGAACACAACGGGTGGTGTCACTCTTGAAATCTCATGTTATAATGATACAGTGAGTGACTCGAGCTTTTCCAGTTACGGTGAAATGCCGTTCGGCGTAACTGATGGACCACGGTACTGTTACGTACTCTATAATGGCACAGCTCTTAAGTATCTAGGAACATTACCACCTATTGTCAAGGAGATTGCTATTAGTAAGTGGGGCCATTTTTATATTAATGGTTACAATTTCTTTAGCACATTTCCTATTGATTGTATATCTTTTAATTTGACCACTGGTGATAGTGACGTTTTCTGGACAATAGCTTACACATCGTACACTGAAGCATTAGTGCAAGTTGAAAACACAGCTATTACAAAGGTGACGTATTGTAATAGTTACGTTAATAACATTAAATGCTCTCAACTTACTGCTAATTTGAATAATGGATTTTATCCTGTTTCTTCAAGTGAAGTTGGTCTTGTCAATAAGAGTGTTGTGTTACTACCTAGCTTTTACACACATACCATTGTTAACATAACTATTGGTCTTGGTATGAAGCGTAGTGGTTATGGTCAACCCATAGCCTCAACATTAAGTAACATTACACTACCAATGCAGGATAACAACACCGATGTGTACTGTATTCGTTCTGACCAATTTTCAGTTTGTGTTCATTCTACTTGCAAAAGTTCTTTATGGGACAATGTTTTTAAGCGAAACTGCACGGACGTTTTAGATGCCACAGCTGTTATAAAAACTGGTACTTGTCCTTTCTCATTTGATAAATTGAACAATTACTTAACTTTTAACAAGTTCTGTTTGTCGTTGAGTCCTGTTGGTGCTAATTGTAAGTTTGATGTAGCTGCCCGTACAAGAACCAATGATCAGGTTGTTAGAAGTTTGTATGTAATATATGAAGAAGGAGACAACATAGTGGGTGTACCGTCTGATAATAGTGGTTTACACGATTTGTCAGTGCTACACCTAGATTCCTGCACAGATTACAATATATATGGTAGAACTGGTGTTGGTATTATTAGACAAACTAACAGGACGCTACTTAGTGGCTTATATTACACATCACTATCAGGTGATTTGTTAGGTTTTAAAAATGTTAGTGATGGTGTCATCTACTCTGTAACGCCATGTGATGTAAGCGCACAAGCAGCTGTTATTGATGGTACCATAGTTGGGGCTATCACTTCCATTAACAGTGAACTGTTAGGTCTAACACATTGGACAACAACACCTAATTTTTATTACTACTCTATATATAATTACACAAATGATAGGACTCGTGGCACTGCAATTGACAGTAATGATGTTGATTGTGAACCTGTCATAACCTATTCTAACATAGGTGTTTGTAAAAATGGTGCTTTGGTTTTTATTAACGTCACACATTCTGATGGAGACGTGCAACCAATTAGCACTGGTAACGTCACGATACCTACAAACTTTACTATATCCGTGCAAGTCGAATATATTCAGGTTTACACTACACCAGTGTCAATGGACTGTTCAAGATATGTTTGTAATGGCAACCCTAGGTGTAACAAATTGTTAACACAATACGTTTCTGCATGTCAAACTATTGAGCAAGCACTTGCAATGGGTGCCAGACTTGAAAACATGGAAGTTGATTCCATGTTATTTGTTTCTGAAAATGCCCTTAAATTGGCTTCTGTCGAAGCATTCAATAGTTCAGAAACTTTAGATCCTATTTACAAAGAATGGCCTAATATAGGTGGCTCTTGGCTAGAAGGTCTAAAATACATACTTCCGTCCGATAATAGCAAACGTAAGTATCGTTCAGCTATAGAGGACTTGCTTTTTGCTAAGGTTGTAACATCTGGTTTAGGTACAGTTGATGAAGATTATAAACGTTGTACAGGTGGTTATGGCATAGCTGACTTAGTATGTGCTCAATACTACAATGGCATCATGGTGCTACCTGGTGTGGCTAATGCTGACAAAATGACTATGTACACAGCATCCCTCACAGGTGGTATAACATTAGGTGCACTTGGTGGAGGCGCCGTGGCTATACCTTTTGCAGTAGCAGTTCAGGCTAGACTTAATTATGTTGCTCTACAAACTGATGTATTGAACAAAAACCAGCAGATCCTGGCTAGTGCTTTCAATCAAGCTATTGGTAACATTACACAGTCATTTGGTAAGGTTAATGATGCTATACATCAGACATCACGAGGTCTTGCAACTGTTGCTAAAGCATTGGCAAAAGTGCAAGATGTTGTCAACACACAAGGGCAAGCTTTAAGCCACCTAACAGTACAATTGCAAAATAATTTCCAAGCCATTAGTAGTTCTATTAGTGACATTTATAATAGGCTTGACGAATTGAGTGCTGATGCACAAGTTGACAGGCTGATCACAGGAAGACTTACAGCACTTAATGCATTTGTGTCTCAGACTCTAACCAGACAAGCCGAGGTTAGGGCTAGTAGACAACTTGCCAAAGACAAGGTTAATGAATGCGTTAGGTCTCAGTCTCAGAGATTCGGATTCTGTGGTAATGGTACACATTTGTTTTCACTCGCAAATGCAGCACCAAATGGCATGATCTTCTTTCACACAGTGCTATTACCAACGGCTTATGAAACTGTGACTGCTTGGGCAGGTATTTGTGCTTTAGATGGTGATCGCACTTTTGGACTTGTCGTTAAAGATGTCCAGTTGACTTTGTTTCGTAATCTAGATGACAAGTTCTATTTGACCCCCAGAACTATGTATCAGCCTAGAGTGGCAACTAGTTCTGATTTTGTTCAAATTGAAGGGTGCGATGTGCTGTTTGTTAATGCAACTGCAAGTGATTTGCCTAGTATTATACCTGATTATATTGATATTAATCAGACTGTTCAAGACATATTAGAAAATTTTAGACCAAATTGGACTGTACCTGAGTTGACATTTGACATTTTTAACGCAACCTATTTAAACCTGACAGGTGAAATTGATGACTTAGAATTTAGGTCAGAAAAGCTACATAACACTACTGTAGAACTTGCCATTCTTATTGACAACATTAACAATACATTAGTCAATCTTGAATGGCTCAATAGAATTGAAACCTATGTAAAATGGCCTTGGTATGTGTGGCTACTAATAGGCTTAGTAGTAATATTTTGCGTACCATTACTGCTATTTTGCTGTTGTGGTACAGGTTGCTGTGGATGCATAGGTTGTTTAGGAAGTTGTTGTCACTCTATATGCAGTAGAAGACAATTTGAAAATTACGAACCTATTGAAAAAGTGCACGTCCATTAA |