| Protein Id: ACN71196.1 |
Length: 1448 aa |
| Description: spike protein Transmissible gastroenteritis virus. |
Molecule type: linear |
| Data category: VRL |
Date: 24-Jul-16 |
| Source: Transmissible gastroenteritis virus |
| Class virus: Coronaviridae |
Virus name: Transmissible gastroenteritis virus |
| Host: pig |
Authors: Wang;C.; Chen;J.; Shi;H.; Qiu;H.; Xue;F.; Liu;C.; Zhu;Y.; Liu;S.; Almazan;F.; Enjuanes;L. and Feng;L. |
| Title: Molecular characterization of a Chinese vaccine strain of transmissible gastroenteritis virus: mutations that may contribute to attenuation |
Journal: Virus Genes 40 (3); 403-409 (2010) |
| Taxonomy: Transmissible gastroenteritis virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Alphacoronavirus; Tegacovirus. |
| db_xref: """taxon:11149, CDD:279880, CDD:279881""" |
| Sequence: MKKLFVVLVVMPLIYGDNFPCSKLTNRTIGNHWNLIETFLLNYSSRLPPNSDAVLGDYFPTVQPWFNCIRNNSNDLYVTLENLKALYWDYAIENITSNHKQRLNVVVNGYPYSITVTTTRNFNSAEGAIICICKGSPPTTTTESSLTCNWGSECRLNHKFPICPSNSEANCGNMLYGLQWFADAVVAYLHGASYRISFENQWSGTVTLGDMRATTLETAGTLVDLWWFNPVYDVSYYRVNNKNGTTVVSNCTDQCASYVANVFTTQPGGFIPSDFSFNNWFLLTNSSTLVSGKLVTKQPLLVNCLWPVPSFEEAASTFCFEGAGFDQCNGAVLNNTVDVIRFNLNFTTNVQSGKGATVFSLNTTGGVTLEISCYNDTVSDSSFSSYGEMPFGVTDGPRYCYVLYNGTALKYLGTLPPVVKEIAISKWGHFYINGYNFFSTFPIDCISFNLTTGDSDVFWTIAYTSYTEALVQVENTAITKVTYCNSYVNNIKCSQLTANLNNGFYPVSSSEVGLVNKSVVLLPSFYTHTIVNITIGLGMKRSGYGQPIASTLSNITLPMQDDNTDVYCIRSDQFSVYVHSTCKSALWDNVFKRNCTDVLDATAVIKTGTCPFSFAKLNNYLTFNKFCLSLSPVGANCKFDVAARTRTNDQVVRSLYVIYEEGDNIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGFKNVSDGVIYSVTPCDVIAQAAVIDGTIVGAITSINSELLGLTHWTTTPNFYYYSIYNYTNDRTRGTAIDSNDDCEPVITYSNIGVCKNGALVFINVTHSDGDVQPISTGNVTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPNIGGSWLEGLKYILPSDNSKRKYRSAIEDLLFAKVVTSGLGTVDEDYKRCTGGYDIADLVCAQYYNGIMVLPGVANADKMTMYTASLAGGITLGALGGGAVAIPFAVAVQARLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQDVVNAQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTLLLPTAYETVTAWAGICALDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLFVNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTFDIFNATYLNLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWLLIGLVVIFCIPLLLFCCCSTGCCGCIGCLGSCCHSICSRRQFENYEPIEKVHVH |
Nucleotide
| Nucleotide_Id: FJ755618.2 |
Length: 4347bp |
| Description: Transmissible gastroenteritis virus strain H16; complete genome |
Source: Transmissible gastroenteritis virus |
| Nucleotide_type: RNA |
Molecule type: linear |
| Data category: VRL |
Date: 24-Jul-16 |
| Class virus: Coronaviridae |
Virus name: Transmissible gastroenteritis virus |
| CDS: FJ755618.2:20365..24711 |
Host: pig |
| Authors: Wang;C.; Chen;J.; Shi;H.; Qiu;H.; Xue;F.; Liu;C.; Zhu;Y.; Liu;S.; Almazan;F.; Enjuanes;L. and Feng;L. |
Journal: Virus Genes 40 (3); 403-409 (2010) |
| Title: Molecular characterization of a Chinese vaccine strain of transmissible gastroenteritis virus: mutations that may contribute to attenuation |
db_xref: taxon:11149 |
| Taxonomy: Transmissible gastroenteritis virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Alphacoronavirus; Tegacovirus. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(28569); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(314); ExactPosition(12368); strand=1); type='CDS'); SeqFeature(FeatureLocation(BeforePosition(12325); ExactPosition(20368); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(20364); ExactPosition(24711); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(24813); ExactPosition(25032); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25093); ExactPosition(25828); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25814); ExactPosition(26063); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(26073); ExactPosition(26862); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(26874); ExactPosition(28023); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28028); ExactPosition(28265); strand=1); type='CDS') |
| Sequence: ATGAAAAAATTATTTGTGGTTTTGGTTGTAATGCCATTGATTTATGGAGACAATTTTCCTTGTTCTAAATTGACTAATAGAACTATAGGTAACCATTGGAATCTCATTGAAACCTTCCTTCTAAATTATAGTAGTAGGTTACCACCTAATTCAGATGCGGTGTTAGGTGATTATTTTCCTACTGTACAACCTTGGTTTAATTGCATTCGCAATAATAGTAATGACCTTTATGTTACATTGGAAAATCTTAAAGCATTGTATTGGGATTATGCTATAGAAAATATCACTTCGAATCACAAACAACGGTTAAACGTAGTCGTTAATGGATACCCATACTCCATCACAGTTACAACAACCCGCAATTTTAATTCTGCTGAAGGTGCTATTATATGCATTTGCAAGGGCTCACCACCTACTACCACCACAGAATCTAGTTTGACTTGCAATTGGGGTAGTGAGTGCAGGTTAAACCATAAGTTCCCTATATGTCCTTCTAATTCAGAGGCAAATTGTGGTAATATGCTGTATGGCCTACAATGGTTTGCAGATGCGGTTGTTGCTTATTTACATGGTGCTAGTTACCGTATTAGTTTTGAAAATCAATGGTCTGGCACTGTTACACTTGGTGATATGCGTGCGACTACATTAGAAACCGCTGGCACGCTTGTAGACCTTTGGTGGTTTAATCCTGTTTATGATGTCAGTTATTATAGAGTTAATAATAAAAATGGTACTACCGTAGTTTCCAATTGCACTGATCAATGTGCTAGTTATGTGGCTAATGTTTTTACTACACAGCCAGGAGGCTTTATACCATCAGATTTTAGTTTTAATAATTGGTTCCTTCTAACTAATAGCTCCACGTTGGTTAGTGGTAAATTAGTTACCAAACAGCCGTTATTAGTTAATTGCTTATGGCCAGTCCCTAGCTTTGAAGAAGCAGCTTCTACATTTTGTTTTGAAGGTGCTGGCTTTGATCAATGTAATGGTGCTGTTTTAAATAACACTGTAGACGTCATCAGGTTTAACCTTAATTTTACTACAAATGTACAATCAGGTAAGGGTGCCACAGTGTTTTCATTGAACACAACGGGTGGTGTCACTCTTGAAATCTCATGTTATAATGATACAGTGAGTGACTCGAGCTTTTCCAGTTACGGTGAAATGCCGTTCGGCGTAACTGATGGACCACGGTACTGTTACGTACTCTATAATGGCACAGCTCTTAAGTATCTAGGAACATTACCACCTGTTGTCAAGGAGATTGCTATTAGTAAGTGGGGCCATTTTTATATTAATGGTTACAATTTCTTTAGCACATTTCCTATTGATTGTATATCTTTTAATTTGACCACTGGTGATAGTGACGTTTTCTGGACAATAGCTTACACATCGTACACTGAAGCATTAGTACAAGTTGAAAACACAGCTATTACAAAGGTGACGTATTGTAATAGTTACGTTAATAACATTAAATGCTCTCAACTTACTGCTAATTTGAATAATGGATTTTATCCTGTTTCTTCAAGTGAAGTTGGTCTTGTCAATAAGAGTGTTGTGTTACTACCTAGCTTTTACACACATACCATTGTTAACATAACTATTGGTCTTGGTATGAAGCGTAGTGGTTATGGTCAACCCATAGCCTCAACATTAAGTAACATTACACTACCAATGCAGGATGACAACACCGATGTGTACTGTATTCGTTCTGACCAATTTTCAGTTTATGTTCATTCTACTTGCAAAAGTGCTTTATGGGACAATGTTTTTAAGCGAAACTGCACGGACGTTTTAGATGCCACAGCTGTTATAAAAACTGGTACTTGTCCTTTCTCATTTGCTAAATTGAACAATTACTTAACTTTTAACAAGTTCTGTTTGTCGTTGAGTCCTGTTGGTGCTAATTGTAAGTTTGATGTAGCTGCCCGTACAAGAACCAATGATCAGGTTGTTAGAAGTTTGTATGTAATATATGAAGAAGGAGACAACATAGTGGGTGTACCGTCTGATAATAGTGGTTTACACGATTTGTCAGTGCTACACCTAGATTCCTGCACAGATTACAATATATATGGTAGAACTGGTGTTGGTATTATTAGACAAACTAACAGGACGCTACTTAGTGGCTTATATTACACATCACTATCAGGTGATTTGTTAGGTTTTAAAAATGTTAGTGATGGTGTCATCTACTCTGTAACGCCATGTGATGTAATCGCACAAGCAGCTGTTATTGATGGTACCATAGTTGGGGCTATCACTTCCATTAACAGTGAACTGTTAGGTCTAACACATTGGACAACAACACCTAATTTTTATTACTACTCTATATATAATTACACAAATGATAGGACTCGTGGCACTGCAATTGACAGTAATGATGATTGTGAACCTGTCATAACCTATTCTAACATAGGTGTTTGTAAAAATGGTGCTTTGGTTTTTATTAACGTCACACATTCTGATGGAGACGTGCAACCAATTAGCACTGGTAACGTCACGATACCTACAAACTTTACTATATCCGTGCAAGTCGAATATATTCAGGTTTACACTACACCAGTGTCAATAGACTGTTCAAGATATGTTTGTAATGGCAACCCTAGGTGTAACAAATTGTTAACACAATACGTTTCTGCATGTCAAACTATTGAGCAAGCACTTGCAATGGGTGCCAGACTTGAAAACATGGAAGTTGATTCCATGTTATTTGTTTCTGAAAATGCCCTTAAATTGGCTTCTGTCGAAGCATTCAATAGTTCAGAAACTTTAGATCCTATTTACAAAGAATGGCCTAATATAGGTGGCTCTTGGCTAGAAGGTCTAAAATACATACTTCCGTCCGATAATAGCAAACGTAAGTATCGTTCAGCTATAGAGGACTTGCTTTTTGCTAAGGTTGTAACATCTGGTTTAGGTACAGTTGATGAAGATTATAAACGTTGTACAGGTGGTTATGACATAGCTGACTTAGTATGTGCTCAATACTACAATGGCATCATGGTGCTACCTGGTGTGGCTAATGCTGACAAAATGACTATGTACACAGCATCCCTCGCAGGTGGTATAACATTAGGTGCACTTGGTGGAGGCGCCGTGGCTATACCTTTTGCAGTAGCAGTTCAGGCTAGACTTAATTATGTTGCTCTACAAACTGATGTATTGAACAAAAACCAGCAGATCCTGGCTAGTGCTTTCAATCAAGCTATTGGTAACATTACACAGTCATTTGGTAAGGTTAATGATGCTATACATCAAACATCACGAGGTCTTGCAACTGTTGCTAAAGCATTGGCAAAAGTGCAAGATGTTGTCAACGCACAAGGGCAAGCTTTAAGCCACCTAACAGTACAATTGCAAAATAATTTCCAAGCCATTAGTAGTTCTATTAGTGACATTTATAATAGGCTTGATGAATTGAGTGCTGATGCACAAGTTGACAGGCTGATCACAGGAAGACTTACAGCACTTAATGCATTTGTGTCTCAGACTCTAACCAGACAAGCCGAGGTTAGGGCTAGTAGACAACTTGCCAAAGACAAGGTTAATGAATGCGTTAGGTCTCAGTCTCAGAGATTCGGATTCTGTGGTAATGGTACACATTTGTTTTCACTCGCAAATGCAGCACCAAATGGCATGATCTTCTTTCACACATTGCTATTACCAACGGCTTATGAAACTGTGACTGCTTGGGCAGGTATTTGTGCTTTAGATGGTGATCGCACTTTTGGACTTGTCGTTAAAGATGTCCAGTTGACTTTGTTTCGTAATCTAGATGACAAGTTCTATTTGACCCCCAGAACTATGTATCAGCCTAGAGTGGCAACTAGTTCTGATTTTGTTCAAATTGAAGGGTGCGATGTGCTGTTTGTTAATGCAACTGTAAGTGATTTGCCTAGTATTATACCTGATTATATTGATATTAATCAGACTGTTCAAGACATATTAGAAAATTTTAGACCAAATTGGACTGTACCTGAGTTGACATTTGACATTTTTAACGCAACCTATTTAAACCTGACTGGTGAAATTGATGACTTAGAATTTAGGTCAGAAAAGCTACATAACACTACTGTAGAACTTGCCATTCTTATTGACAACATTAACAATACATTAGTCAATCTTGAATGGCTCAATAGAATTGAAACCTATGTAAAATGGCCTTGGTATGTGTGGCTACTAATAGGCTTAGTAGTAATATTTTGCATACCATTACTGCTATTTTGCTGTTGTAGTACAGGTTGCTGTGGATGCATAGGTTGTTTAGGAAGTTGTTGTCACTCTATATGCAGTAGAAGACAATTTGAAAATTACGAACCTATTGAAAAAGTGCACGTCCATTAA |