| Protein Id: ACJ66977.1 |
Length: 1363 aa |
| Description: spike protein White-tailed deer coronavirus US/OH-WD470/1994. |
Molecule type: linear |
| Data category: VRL |
Date: 26-Jul-16 |
| Source: White-tailed deer coronavirus US/OH-WD470/1994 |
| Class virus: Coronaviridae |
Virus name: White-tailed deer coronavirus |
| Host: white-tailed deer |
Authors: Alekseev;K.P.; Vlasova;A.N.; Jung;K.; Hasoksuz;M.; Zhang;X.; Halpin;R.; Wang;S.; Ghedin;E.; Spiro;D. and Saif;L.J. |
| Title: Bovine-like coronaviruses isolated from four species of captive wild ruminants are homologous to bovine coronaviruses; based on complete genomic sequences |
Journal: J Virol 82 (24); 12422-12431 (2008) |
| Taxonomy: White-tailed deer coronavirus US/OH-WD470/1994 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus. |
| db_xref: """taxon:422134, CDD:293060, CDD:286493, CDD:279881, CDD:223910""" |
| Sequence: MFLILLISLPTAFAVIGDLKCTTVSINDVDTGVPSISTDTVDVTNGLGTYYVLDRVYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSTLWFKPPFLSDFTNGIFAKVKNTKVVKDGVMYSEFPAITIGSTFVNTSYSVVVQPHTTNFDSKLQGLLEISVCQYTMCEYPNTICNPNLGNQRVELWHWDTGVVSCLYKRNFTYDVNADYLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYLGTVLSHYYVMPLTCNSALTLEYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPDCNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSRFNPSTWNRRFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKAPTNFCPCKLDGSLCVGSGSGIDAGYKNTGIGTCPAGTNYLTCHNAAQCDCLCTPDPITSKATGPYKCPQTKYLVGIGEHCSGLAIKSDYCGGNPCSCQPQAFLGWSVDSCLQGDRCNIFANFILHDVNSGTTCSTDLQKSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRVSAAFHANSSEPALLFRNIKCNYVFNNTLSRQLQPINYFDSYLGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTKRRSRRSITTGYRFTNFEPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGGRGIAPKSGYFVNVNNTWMFTGSGYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDLSLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWLLIGFAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIKTSHDD |
Nucleotide
| Nucleotide_Id: FJ425187.1 |
Length: 4092bp |
| Description: White-tailed deer coronavirus US/OH-WD470/1994; complete genome |
Source: White-tailed deer coronavirus US/OH-WD470/1994 |
| Nucleotide_type: ss-RNA |
Molecule type: linear |
| Data category: VRL |
Date: 26-Jul-16 |
| Class virus: Coronaviridae |
Virus name: White-tailed deer coronavirus |
| CDS: FJ425187.1:23627..27718 |
Host: white-tailed deer |
| Authors: Alekseev;K.P.; Vlasova;A.N.; Jung;K.; Hasoksuz;M.; Zhang;X.; Halpin;R.; Wang;S.; Ghedin;E.; Spiro;D. and Saif;L.J. |
Journal: J Virol 82 (24); 12422-12431 (2008) |
| Title: Bovine-like coronaviruses isolated from four species of captive wild ruminants are homologous to bovine coronaviruses; based on complete genomic sequences |
db_xref: taxon:422134 |
| Taxonomy: White-tailed deer coronavirus US/OH-WD470/1994 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(31020); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(196); ExactPosition(13348); strand=1); type='CDS'); SeqFeature(FeatureLocation(BeforePosition(13326); ExactPosition(21480); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(21489); ExactPosition(22326); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(22337); ExactPosition(23612); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(23626); ExactPosition(27718); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27874); ExactPosition(28012); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28091); ExactPosition(28421); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28407); ExactPosition(28662); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28676); ExactPosition(29369); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(29378); ExactPosition(30725); strand=1); type='CDS') |
| Sequence: ATGTTTTTGATACTTTTAATTTCCTTACCAACGGCTTTTGCTGTTATAGGAGATTTAAAGTGTACTACAGTTTCCATTAATGATGTTGACACTGGTGTTCCTTCTATTAGCACTGATACTGTCGATGTTACTAATGGTTTAGGTACTTATTATGTTTTAGATCGTGTGTATTTAAATACTACGTTGTTGCTTAATGGTTACTACCCTACTTCAGGTTCTACATATCGTAATATGGCACTGAAGGGAACTTTACTATTGAGCACACTATGGTTTAAACCACCTTTTCTTTCTGATTTTACTAATGGTATTTTTGCTAAGGTCAAAAATACCAAGGTTGTTAAAGATGGTGTAATGTATAGTGAGTTTCCTGCTATAACTATAGGTAGTACTTTTGTAAATACATCCTATAGTGTGGTAGTACAACCACATACTACTAATTTTGATAGTAAATTACAAGGTCTCTTAGAGATTTCTGTTTGCCAGTATACTATGTGCGAGTACCCAAATACGATTTGTAATCCTAATCTGGGTAATCAACGCGTAGAACTATGGCATTGGGATACAGGTGTTGTTTCCTGTTTATATAAGCGTAATTTCACATATGATGTGAATGCTGATTATTTGTATTTCCATTTTTATCAAGAAGGTGGTACTTTTTATGCATATTTTACAGACACTGGTGTTGTTACTAAGTTTCTGTTTAATGTTTATTTAGGCACGGTGCTCTCACATTATTATGTCATGCCTTTGACTTGTAATAGTGCTCTGACTTTAGAATATTGGGTTACACCTCTCACTTCTAAACAATATCTACTAGCTTTCAATCAAGATGGTGTTATTTTTAATGCTGTTGATTGTAAGAGTGATTTTATGAGTGAGATTAAGTGTAAAACACTATCTATAGCACCATCTACTGGTGTTTATGAATTAAACGGTTACACTGTTCAGCCAATTGCAGATGTTTACCGACGTATACCTAATCTTCCCGATTGCAATATTGAGGCTTGGCTTAATGATAAGTCGGTGCCCTCTCCATTAAATTGGGAACGTAAGACCTTTTCAAATTGTAATTTTAATATGAGCAGCCTGATGTCTTTTATTCAGGCAGACTCATTTACTTGTAATAATATTGATGCTGCTAAGATATATGGTATGTGTTTTTCCAGCATAACTATAGATAAGTTTGCAATACCCAATGGTAGGAAGGTTGACCTACAATTGGGTAATTTGGGTTATTTGCAGTCTTTTAACTATAGAATTGATACTACTGCTACAAGTTGTCAGTTGTATTATAATTTACCTGCTGCTAATGTCTCTGTTAGCAGGTTTAATCCTTCTACTTGGAATAGGAGATTTGGTTTTACAGAACAATCTGTTTTTAAGCCTCAACCTGCAGGTGTTTTTACTGATCATGATGTTGTTTATGCACAACATTGTTTTAAAGCTCCCACAAATTTCTGTCCGTGTAAATTGGATGGGTCTTTGTGTGTAGGTAGTGGTTCTGGTATAGATGCTGGTTATAAAAATACTGGTATAGGCACTTGTCCTGCAGGTACTAATTATTTAACTTGCCATAATGCTGCCCAATGTGATTGTTTGTGCACTCCAGACCCCATTACATCTAAAGCTACAGGGCCTTACAAGTGCCCCCAAACTAAATATTTAGTTGGTATAGGTGAGCACTGTTCGGGTCTTGCTATTAAAAGTGATTATTGTGGAGGTAATCCTTGTAGTTGCCAACCACAAGCATTTTTGGGTTGGTCTGTTGACTCTTGTTTACAAGGGGATAGGTGTAATATTTTTGCTAATTTTATTTTGCATGATGTTAATAGTGGTACTACTTGTTCTACTGATTTACAAAAATCAAACACAGACATAATTCTTGGTGTTTGTGTTAATTATGATCTTTATGGTATTACTGGCCAAGGGATTTTTGTTGAGGTTAATGCGACTTATTATAATAGTTGGCAGAACCTTTTATATGATTCTAATGGTAATCTCTATGGTTTTAGAGACTACTTAACAAATAGAACTTTTATGATTCGTAGTTGCTATAGTGGTCGTGTTTCAGCGGCCTTTCATGCTAACTCTTCCGAACCAGCATTGCTATTTCGGAATATCAAATGCAATTACGTTTTTAATAACACTCTTTCACGACAGCTGCAACCTATTAACTATTTTGATAGCTATCTTGGTTGTGTTGTCAATGCTGATAATAGTACTTCTAGTGTTGTTCAAACATGTGATCTCACAGTAGGTAGTGGTTACTGTGTGGATTACTCTACAAAAAGACGAAGTCGTAGATCGATTACCACTGGTTATCGGTTTACTAATTTTGAGCCATTTACTGTTAATTCAGTAAATGATAGTTTAGAACCTGTAGGTGGTTTGTATGAAATTCAAATACCTTCAGAGTTTACTATAGGTAATATGGAGGAGTTTATTCAAACAAGCTCTCCTAAAGTTACTATTGATTGTTCTGCTTTTGTCTGTGGTGATTATGCAGCATGTAAATCACAGTTGGTTGAATATGGTAGCTTCTGTGACAATATTAATGCTATACTCACAGAAGTAAATGAACTACTTGACACTACACAGTTGCAAGTAGCTAATAGTTTAATGAATGGTGTCACTCTTAGCACTAAGCTTAAAGATGGCGTTAATTTCAATGTAGACGACATCAATTTTTCCCCTGTATTAGGTTGTTTAGGAAGCGATTGCAATAAAGTTTCCAGTAGATCTGCTATAGAGGACTTACTTTTTTCTAAAGTAAAGTTATCTGATGTCGGTTTCGTTGAGGCTTATAATAATTGTACTGGAGGTGCCGAAATTAGGGACCTCATTTGTGTGCAAAGTTATAATGGTATCAAGGTGTTGCCTCCACTGCTCTCAGAAAATCAGATCAGTGGATACACTTTGGCTGCCACCTCTGCTAGCCTGTTTCCTCCATGGTCAGCAGCAGCAGGTGTACCATTCTATTTAAATGTTCAGTATCGTATTAATGGTATTGGTGTTACCATGGATGTGCTAAGTCAAAATCAAAAGCTTATTGCTAATGCATTTAACAATGCTCTTGGTGCTATTCAGGAAGGGTTTGATGCTACCAATTCTGCTTTAGTTAAAATTCAAGCTGTTGTTAATGCAAATGCTGAAGCTCTTAATAACTTATTGCAACAACTCTCTAATAGATTTGGTGCTATAAGTTCTTCTTTACAAGAAATTCTATCTAGACTGGATGCTCTTGAAGCGCAAGCTCAGATAGACAGACTTATTAATGGGCGTCTTACCGCTCTTAATGCTTATGTTTCTCAACAGCTTAGTGACTCTACACTAGTAAAGTTTAGTGCAGCACAAGCTATGGAGAAGGTTAATGAATGTGTCAAAAGCCAATCATCTAGGATAAATTTTTGTGGTAATGGTAATCATATTATATCATTAGTGCAGAATGCTCCATATGGTTTGTATTTTATCCACTTTAGCTATGTCCCTACTAAGTATGTCACAGCGAAGGTTAGTCCCGGTCTGTGCATTGCTGGTGGTAGAGGTATAGCCCCTAAGAGTGGTTATTTTGTTAATGTAAATAATACTTGGATGTTCACTGGTAGTGGTTATTACTACCCTGAACCTATAACTGGAAATAATGTTGTTGTTATGAGTACCTGTGCTGTTAATTATACTAAAGCGCCGGATGTAATGCTGAACATTTCAACACCCAACCTCCCTGACTTTAAGGAAGAGTTGGATCAATGGTTTAAAAACCAAACATCAGTGGCACCAGATTTGTCACTTGATTATATAAATGTTACATTCTTGGACCTACAAGATGAAATGAATAGGTTACAGGAGGCAATAAAAGTTTTAAATCAGAGCTACATCAATCTCAAGGACATTGGTACTTATGAGTATTATGTAAAATGGCCTTGGTATGTATGGCTTTTAATTGGCTTTGCAGGTGTAGCTATGCTTGTTTTACTATTCTTCATATGCTGTTGTACAGGATGTGGGACTAGTTGTTTTAAGAAATGTGGTGGTTGTTGTGATGATTATACTGGACACCAGGAGTTAGTAATTAAAACATCACATGACGACTAA |