Protein Id: YP_009812583.1 |
Length: 750 aa |
Description: tail spike protein Escherichia phage C130_2. |
Molecule type: linear |
Data category: PHG |
Date: 15-May-20 |
Source: Escherichia phage C130_2 |
Class virus: phage |
Virus name: Escherichia phage |
Host: Enterobacteriaceae |
Authors: Svab;D.; Falgenhauer;L.; Rohde;M.; Chakraborty;T. and Toth;I. |
Title: Complete genome sequence of C130_2; a novel myovirus infecting pathogenic Escherichia coli and Shigella strains |
Journal: Arch Virol (2018) In press |
Taxonomy: Escherichia phage C130_2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Giessenvirus; Escherichia virus C1302. |
db_xref: """taxon:2234093, GeneID:55003651""" |
Sequence: MSDIVFSAVRMPSSPFIQVGKFAPISGGDIYIGKPDTNPKDPANQVQVYLENEDLTLVPVPQPIKINQSGYPEYNGIVGRFVTQTASSMDVYDRNDVLQYSFDNLLEYDAAQMWKVIGSSTGWEYVGTPEGTLKTKLQGFVTPFDFVGREEYTSVSQAIQAMFDYAKANGKIVNAYGWSGTLESTVNPNGITIMGGTWKGTADFRLTDTLIEGAVINNLRIMHYGGDVRIRDCMFDGKPTTSKVASIMMQGVPVDGSTIEVSDSEFRNGLYGILQQGTGSTVVSGVYRNLSFYDMGGDGIELNVVQRHYDNGCLIDGIFLDNIDSTGQAPITPSNWGIGIGVAGQSPYGIDTPDANFAKNITIRNVYANKVRQIVHFEMVRDSVVENIHGDPNQNVSNGSGLTVATVLFYGSRRCSIDGVYGEPVVTGSTLAQDVRVIMLEWGTNAGVGARGPCHDMAIRNVYSKTGRFYAGIGTEKAGATNTYYIENVNVAKFSLFGVATELNMSNVHCRIFDCVGDDSSGGTASNGYLATGRTILRMVNVNATDVNGYGDQGWSRCAYSHIESVGSNVFARPYPRQGIDGGIGAKMTASNHTYIIPSPADMNATGIWDGNAFPTGREFMEGDLVVRNDGKIFVVTASGAYIPAIDEFKIKATTVGSFSIASNFPLGGNNGDMVWIYKTPLSPGCRIVIPGAGEGGNPLSTWITRGPYRVNVNDPTSEIRIDIAHAIQTATPAGTQLAAAKVVSFRTPT |
Nucleotide
Nucleotide_Id: NC_048067.1 |
Length: 2253bp |
Description: Escherichia phage C130_2; complete genome |
Source: Escherichia phage C130_2 |
Nucleotide_type: DNA |
Molecule type: circular |
Data category: PHG |
Date: 15-May-20 |
Class virus: phage |
Virus name: Escherichia phage |
CDS: complement(NC_048067.1:20731..22983) |
Host: Enterobacteriaceae |
Authors: Svab;D.; Falgenhauer;L.; Rohde;M.; Chakraborty;T. and Toth;I. |
Journal: Arch Virol (2018) In press |
Title: Complete genome sequence of C130_2; a novel myovirus infecting pathogenic Escherichia coli and Shigella strains |
db_xref: taxon:2234093; GeneID:55003675; GeneID:55003675; GeneID:55003617; GeneID:55003617; GeneID:55003618; GeneID:55003618; GeneID:55003619; GeneID:55003619; GeneID:55003620; GeneID:55003620; GeneID:55003621; GeneID:55003621; GeneID:55003622; GeneID:55003622; GeneID:55003623; GeneID:55003623; GeneID:55003624; GeneID:55003624; GeneID:55003625; GeneID:55003625; GeneID:55003626; GeneID:55003626; GeneID:55003627; GeneID:55003627; GeneID:55003628; GeneID:55003628; GeneID:55003629; GeneID:55003629; GeneID:55003630; GeneID:55003630; GeneID:55003631; GeneID:55003631; GeneID:55003632; GeneID:55003632; GeneID:55003633; GeneID:55003633; GeneID:55003634; GeneID:55003634; GeneID:55003635; GeneID:55003635; GeneID:55003636; GeneID:55003636; GeneID:55003637; GeneID:55003637; GeneID:55003638; GeneID:55003638; GeneID:55003639; GeneID:55003639; GeneID:55003640; GeneID:55003640; GeneID:55003641; GeneID:55003641; GeneID:55003642; GeneID:55003642; GeneID:55003643; GeneID:55003643; GeneID:55003644; GeneID:55003644; GeneID:55003645; GeneID:55003645; GeneID:55003646; GeneID:55003646; GeneID:55003647; GeneID:55003647; GeneID:55003648; GeneID:55003648; GeneID:55003649; GeneID:55003649; GeneID:55003650; GeneID:55003650; GeneID:55003651; GeneID:55003651; GeneID:55003652; GeneID:55003652; GeneID:55003653; GeneID:55003653; GeneID:55003654; GeneID:55003654; GeneID:55003655; GeneID:55003655; GeneID:55003656; GeneID:55003656; GeneID:55003657; GeneID:55003657; GeneID:55003658; GeneID:55003658; GeneID:55003659; GeneID:55003659; GeneID:55003660; GeneID:55003660; GeneID:55003661; GeneID:55003661; GeneID:55003662; GeneID:55003662; GeneID:55003663; GeneID:55003663; GeneID:55003664; GeneID:55003664; GeneID:55003665; GeneID:55003665; GeneID:55003666; GeneID:55003666; GeneID:55003667; GeneID:55003667; GeneID:55003668; GeneID:55003668; GeneID:55003669; GeneID:55003669; GeneID:55003670; GeneID:55003670; GeneID:55003671; GeneID:55003671; GeneID:55003672; GeneID:55003672; GeneID:55003673; GeneID:55003673; GeneID:55003674; GeneID:55003674 |
Taxonomy: Escherichia phage C130_2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Giessenvirus; Escherichia virus C1302. |
Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(41775); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(284); strand=1); type='repeat_region'); SeqFeature(FeatureLocation(ExactPosition(100); ExactPosition(1222); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(100); ExactPosition(1222); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(1341); ExactPosition(1551); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(1341); ExactPosition(1551); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(1618); ExactPosition(1870); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(1618); ExactPosition(1870); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(2124); ExactPosition(3666); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(2124); ExactPosition(3666); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(3836); 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ExactPosition(5956); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(5974); ExactPosition(6673); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(5974); ExactPosition(6673); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(6812); ExactPosition(7061); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(6812); ExactPosition(7061); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(7053); ExactPosition(7545); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(7053); ExactPosition(7545); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(7541); ExactPosition(8078); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(7541); ExactPosition(8078); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(8090); ExactPosition(8888); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(8090); ExactPosition(8888); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(8975); ExactPosition(9287); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(8975); ExactPosition(9287); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(9273); ExactPosition(9456); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(9273); ExactPosition(9456); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(9452); ExactPosition(9653); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(9452); ExactPosition(9653); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(9645); ExactPosition(10083); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(9645); ExactPosition(10083); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(10082); ExactPosition(10319); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(10082); ExactPosition(10319); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(10321); ExactPosition(10636); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(10321); ExactPosition(10636); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(10734); ExactPosition(11529); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(10734); ExactPosition(11529); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(11533); ExactPosition(11746); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(11533); ExactPosition(11746); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(11742); ExactPosition(11958); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(11742); ExactPosition(11958); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(11968); ExactPosition(12553); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(11968); ExactPosition(12553); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(12600); ExactPosition(13329); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(12600); ExactPosition(13329); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(13328); ExactPosition(13781); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(13328); ExactPosition(13781); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(13939); ExactPosition(14782); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(13939); ExactPosition(14782); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(14845); ExactPosition(16903); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(14845); ExactPosition(16903); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(16902); ExactPosition(17370); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(16902); ExactPosition(17370); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(17359); ExactPosition(18367); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(17359); ExactPosition(18367); strand=1); type='CDS'); 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SeqFeature(FeatureLocation(ExactPosition(29038); ExactPosition(30487); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(30486); ExactPosition(30954); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(30486); ExactPosition(30954); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(30956); ExactPosition(31283); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(30956); ExactPosition(31283); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(31353); ExactPosition(32619); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(31353); ExactPosition(32619); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(32657); ExactPosition(33656); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(32657); ExactPosition(33656); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(33800); ExactPosition(34247); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(33800); ExactPosition(34247); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(34256); ExactPosition(34730); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(34256); ExactPosition(34730); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(34809); ExactPosition(37050); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(34809); ExactPosition(37050); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(37176); ExactPosition(37380); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(37176); ExactPosition(37380); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(37376); ExactPosition(37511); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(37376); ExactPosition(37511); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(37524); ExactPosition(39147); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(37524); ExactPosition(39147); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(39136); ExactPosition(39568); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(39136); ExactPosition(39568); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(39530); ExactPosition(40124); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(39530); ExactPosition(40124); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(40187); ExactPosition(40463); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(40187); ExactPosition(40463); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(40419); ExactPosition(40620); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(40419); ExactPosition(40620); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(40619); ExactPosition(40865); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(40619); ExactPosition(40865); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(40870); ExactPosition(41137); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(40870); ExactPosition(41137); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(41139); ExactPosition(41496); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(41139); ExactPosition(41496); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(41491); ExactPosition(41775); strand=1); type='repeat_region') |
Sequence: TTATGTTGGCGTGCGGAACGACACAACTTTTGCCGCTGCAAGCTGGGTGCCAGCCGGTGTGGCGGTCTGGATAGCGTGAGCAATATCGATCCTGATCTCACTGGTTGGATCGTTCACGTTGACACGATAAGGCCCGCGCGTGATCCACGTAGAAAGAGGATTGCCCCCTTCACCGGCACCAGGGATCACAATTCGGCACCCTGGCGAAAGTGGCGTTTTGTAGATCCAGACCATATCACCATTATTGCCACCTAGCGGAAAGTTTGAAGCAATCGAGAAGGATCCCACGGTGGTTGCCTTGATTTTAAATTCATCAATGGCGGGAATGTACGCGCCGGAGGCGGTCACAACGAAGATCTTTCCGTCATTTCGAACAACGAGATCCCCCTCCATGAACTCACGCCCCGTGGGGAATGCGTTACCATCCCAAATGCCCGTGGCGTTCATATCAGCCGGTGACGGAATGATATAAGTGTGATTCGATGCGGTCATTTTTGCACCGATCCCGCCGTCAATCCCCTGGCGCGGATATGGGCGCGCAAAGACGTTGGATCCTACGCTTTCGATATGCGAATAGGCGCAGCGTGACCAACCTTGATCGCCGTAGCCGTTCACGTCAGTTGCGTTAACGTTGACCATTCGCAAGATGGTGCGCCCCGTGGCAAGGTAGCCGTTTGAAGCTGTGCCGCCCGATGAATCATCACCCACGCAATCAAAGATCCGGCAATGAACATTGCTCATGTTCAATTCAGTTGCCACACCGAAAAGCGAGAATTTCGCCACGTTCACATTTTCAATGTAATACGTGTTAGTTGCCCCTGCCTTCTCGGTGCCGATACCGGCATAAAAGCGCCCTGTTTTACTGTATACGTTGCGGATCGCCATATCGTGACAAGGGCCGCGCGCGCCAACGCCAGCATTTGTGCCCCATTCAAGCATAATAACGCGCACATCCTGGGCAAGCGTGCTGCCGGTAACTACCGGTTCACCGTAAACCCCATCAATGGAGCAACGGCGGGAGCCGTAGAAAAGCACCGTCGCAACCGTCAGGCCGGAACCGTTCGAAACGTTCTGGTTGGGGTCGCCGTGGATGTTTTCAACAACGGAATCACGAACCATTTCGAAGTGTACGATCTGACGCACTTTGTTTGCGTAAACGTTACGGATCGTAATGTTTTTGGCAAAGTTTGCGTCAGGTGTATCAATGCCATAAGGGCTTTGACCTGCAACCCCAATCCCAATACCCCAGTTTGACGGCGTGATCGGGGCTTGGCCTGTTGAGTCGATGTTATCAAGGAAAATGCCGTCAATCAGGCAACCATTATCATAATGGCGCTGTACTACGTTTAACTCGATCCCGTCGCCGCCCATATCGTAAAACGACAAATTGCGGTAGACGCCGGACACAACCGTTGATCCCGTGCCTTGCTGGAGGATGCCGTAAAGGCCATTCCGAAACTCGGAATCGCTGACCTCAATAGTGCTTCCGTCCACTGGCACACCCTGCATCATGATTGATGCAACCTTGCTGGTTGTCGGCTTACCGTCAAACATGCAATCGCGGATCCTTACGTCGCCGCCGTAGTGCATGATTCGCAGGTTGTTAATCACTGCACCTTCGATCAGGGTGTCAGTCAGGCGAAAATCTGCGGTGCCCTTCCAGGTTCCCCCCATGATGGTGATCCCATTCGGGTTGACCGTGCTTTCAAGCGTGCCAGACCAACCATAAGCGTTGACGATCTTCCCGTTCGCTTTGGCGTAGTCAAACATTGCCTGAATCGCCTGTGAAACGCTGGTGTACTCTTCGCGGCCCACAAAATCAAACGGCGTCACAAAGCCTTGCAGTTTGGTTTTTAGCGTGCCTTCTGGCGTGCCCACGTATTCCCAGCCGGTAGACGATCCGATCACCTTCCACATCTGCGCCGCGTCATATTCCAGAAGGTTATCAAAGGAATATTGCAGCACGTCATTGCGATCATAAACGTCCATGCTTGATGCGGTCTGCGTCACAAAGCGCCCAACAATCCCGTTATATTCGGGATAGCCGCTCTGGTTGATTTTGATCGGCTGCGGCACCGGCACCAGCGTTAGATCCTCATTTTCCAGGTACACTTGCACCTGATTTGCCGGATCCTTCGGGTTGGTGTCGGGCTTGCCAATATAGATATCACCGCCGCTGATAGGCGCAAACTTGCCAACCTGAATAAACGGGCTGGACGGCATACGCACGGCAGAAAAAACAATATCGCTCAT |