| Protein Id: YP_009625571.1 |
Length: 585 aa |
| Description: putative tail spike protein Pectobacterium phage vB_PatP_CB5. |
Molecule type: linear |
| Data category: PHG |
Date: 2-May-19 |
| Source: Pectobacterium phage vB_PatP_CB5 |
| Class virus: phage |
Virus name: Pectobacterium phage |
| Host: pig |
Authors: Buttimer;C.; Lucid;A.; Neve;H.; Franz;C.M.; O'Mahony;J.; Turner;D.; Lavigne;R. and Coffey;A. |
| Title: Pectobacterium atrosepticum Phage vB_PatP_CB5: A Member of the Proposed Genus 'Phimunavirus |
Journal: Viruses 10 (8); E394 (2018) |
| Taxonomy: Pectobacterium phage vB_PatP_CB5 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Corkvirinae; Phimunavirus; Pectobacterium virus CB5. |
| db_xref: """taxon:1983582, CDD:312676, GeneID:40102465""" |
| Sequence: MSLVQLIDSTVGLRNELTQPDGAYLTGLGASTVGALLDTTRKLSYYGNNRQALIDLLLHAKVTGGPIDIDVPVLIDTPINMDFEYTPLIMSCSSGRLLSDTTALVLNRLGYGSTINNFDMWNVTAPWAITRWGSTGDWNTSEEAVASLRQTNDPHYYQPTVNDADVWSALTPEQQNQNISPKLEVHNSDGVVLNTPRGRYALYEFYGCNYCRVFNPNLSGGKGVLGTIVFNNTNATAYGIDNWVVGGDDIRNGSFSGVVHLRNKRGGAINCSPYRSGESGIKTYQNELNGVSARCYEMTYTNCHVKQALYDGLDLASDYGAVSERVADLSLAEAPWQELPTKHTVIGCSGFNCGGNALHIDGTGNTVIGMKASLSGLSGVHDDGTRSVYNDVVSVNNARNNISHQVTLSKSQVINGITLVLDAATGTNFGYGVYAPLSNTKGMDTSLVASGTVIPFIVKAQTTADGDLTVGHSAAPDRICRVLGNPELGLTSTPIMALTSLATGTPSAPSGNVYLNSHYLGSEVPGFQVLGVSGGGGLVSTLNSAYATQVGNSQASFVFHGSSLSIVARDAAGVLRQYALTGVPV |
Nucleotide
| Nucleotide_Id: NC_042131.1 |
Length: 1758bp |
| Description: Pectobacterium phage vB_PatP_CB5; complete genome |
Source: Pectobacterium phage vB_PatP_CB5 |
| Nucleotide_type: DNA |
Molecule type: linear |
| Data category: PHG |
Date: 2-May-19 |
| Class virus: phage |
Virus name: Pectobacterium phage |
| CDS: NC_042131.1:42460..44217 |
Host: pig |
| Authors: Buttimer;C.; Lucid;A.; Neve;H.; Franz;C.M.; O'Mahony;J.; Turner;D.; Lavigne;R. and Coffey;A. |
Journal: Viruses 10 (8); E394 (2018) |
| Title: Pectobacterium atrosepticum Phage vB_PatP_CB5: A Member of the Proposed Genus 'Phimunavirus |
db_xref: taxon:1983582; GeneID:40102466; GeneID:40102466; GeneID:40102408; GeneID:40102408; GeneID:40102409; GeneID:40102409; GeneID:40102410; GeneID:40102410; GeneID:40102411; GeneID:40102411; GeneID:40102412; GeneID:40102412; GeneID:40102413; GeneID:40102413; GeneID:40102414; GeneID:40102414; GeneID:40102415; GeneID:40102415; GeneID:40102416; GeneID:40102416; GeneID:40102417; GeneID:40102417; GeneID:40102418; GeneID:40102418; GeneID:40102419; GeneID:40102419; GeneID:40102420; GeneID:40102420; GeneID:40102421; GeneID:40102421; GeneID:40102422; GeneID:40102422; GeneID:40102423; GeneID:40102423; GeneID:40102424; GeneID:40102424; GeneID:40102425; GeneID:40102425; GeneID:40102426; GeneID:40102426; GeneID:40102427; GeneID:40102427; GeneID:40102428; GeneID:40102428; GeneID:40102429; GeneID:40102429; GeneID:40102430; GeneID:40102430; GeneID:40102431; GeneID:40102431; GeneID:40102432; GeneID:40102432; GeneID:40102433; GeneID:40102433; GeneID:40102434; GeneID:40102434; GeneID:40102435; GeneID:40102435; GeneID:40102436; GeneID:40102436; GeneID:40102437; GeneID:40102437; GeneID:40102438; GeneID:40102438; GeneID:40102439; GeneID:40102439; GeneID:40102440; GeneID:40102440; GeneID:40102441; GeneID:40102441; GeneID:40102442; GeneID:40102442; GeneID:40102443; GeneID:40102443; GeneID:40102444; GeneID:40102444; GeneID:40102445; GeneID:40102445; GeneID:40102446; GeneID:40102446; GeneID:40102447; GeneID:40102447; GeneID:40102448; GeneID:40102448; GeneID:40102449; GeneID:40102449; GeneID:40102450; GeneID:40102450; GeneID:40102451; GeneID:40102451; GeneID:40102452; GeneID:40102452; GeneID:40102453; GeneID:40102453; GeneID:40102454; GeneID:40102454; GeneID:40102455; GeneID:40102455; GeneID:40102456; GeneID:40102456; GeneID:40102457; GeneID:40102457; GeneID:40102458; GeneID:40102458; GeneID:40102459; GeneID:40102459; GeneID:40102460; GeneID:40102460; GeneID:40102461; GeneID:40102461; GeneID:40102462; GeneID:40102462; GeneID:40102463; GeneID:40102463; GeneID:40102464; GeneID:40102464; GeneID:40102465; GeneID:40102465 |
| Taxonomy: Pectobacterium phage vB_PatP_CB5 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Corkvirinae; Phimunavirus; Pectobacterium virus CB5. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(44549); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(287); strand=1); type='repeat_region'); SeqFeature(FeatureLocation(ExactPosition(449); ExactPosition(617); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(449); ExactPosition(617); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(785); ExactPosition(944); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(785); ExactPosition(944); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(1171); ExactPosition(1474); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(1171); ExactPosition(1474); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(1460); ExactPosition(1652); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(1460); ExactPosition(1652); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(1651); ExactPosition(1780); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(1651); ExactPosition(1780); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(1828); ExactPosition(2398); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(1828); ExactPosition(2398); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(2461); ExactPosition(2725); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(2461); ExactPosition(2725); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(2801); ExactPosition(3050); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(2801); ExactPosition(3050); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(3046); ExactPosition(3325); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(3046); ExactPosition(3325); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(3407); ExactPosition(3584); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(3407); ExactPosition(3584); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(3580); ExactPosition(3760); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(3580); ExactPosition(3760); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(3756); ExactPosition(4101); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(3756); ExactPosition(4101); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(4106); ExactPosition(4982); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(4106); ExactPosition(4982); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(4994); ExactPosition(5852); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(4994); ExactPosition(5852); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(5841); ExactPosition(6813); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(5841); ExactPosition(6813); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(6799); ExactPosition(7234); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(6799); ExactPosition(7234); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(7226); ExactPosition(7664); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(7226); ExactPosition(7664); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(7660); ExactPosition(8464); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(7660); ExactPosition(8464); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(8783); ExactPosition(8927); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(8783); ExactPosition(8927); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(8926); ExactPosition(9088); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(8926); ExactPosition(9088); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(9087); ExactPosition(10350); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(9087); ExactPosition(10350); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(10336); ExactPosition(10792); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(10336); ExactPosition(10792); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(10791); ExactPosition(11322); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(10791); ExactPosition(11322); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(11365); ExactPosition(11596); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(11365); ExactPosition(11596); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(11585); ExactPosition(11768); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(11585); ExactPosition(11768); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(11760); ExactPosition(11943); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(11760); ExactPosition(11943); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(11996); ExactPosition(14339); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(11996); ExactPosition(14339); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(14328); ExactPosition(14805); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(14328); ExactPosition(14805); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(14816); ExactPosition(15656); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(14816); ExactPosition(15656); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(15669); ExactPosition(16716); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(15669); ExactPosition(16716); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(16672); ExactPosition(16840); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(16672); ExactPosition(16840); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(16836); ExactPosition(17082); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(16836); ExactPosition(17082); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(17074); ExactPosition(17500); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(17074); ExactPosition(17500); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(17480); ExactPosition(17702); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(17480); ExactPosition(17702); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(17694); ExactPosition(18669); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(17694); ExactPosition(18669); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(18778); ExactPosition(19102); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(18778); ExactPosition(19102); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(19212); ExactPosition(19395); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(19212); ExactPosition(19395); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(19401); ExactPosition(21846); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(19401); ExactPosition(21846); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(21938); ExactPosition(22136); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(21938); ExactPosition(22136); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(22132); ExactPosition(22585); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(22132); ExactPosition(22585); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(22577); ExactPosition(22997); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(22577); ExactPosition(22997); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(22989); ExactPosition(23316); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(22989); ExactPosition(23316); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(23318); ExactPosition(24830); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(23318); ExactPosition(24830); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(24829); ExactPosition(25699); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(24829); ExactPosition(25699); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25716); ExactPosition(26700); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25716); ExactPosition(26700); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(26759); ExactPosition(27317); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(26759); ExactPosition(27317); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27326); ExactPosition(27809); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(27326); ExactPosition(27809); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27828); ExactPosition(30129); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(27828); ExactPosition(30129); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(30125); ExactPosition(30740); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(30125); ExactPosition(30740); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(30749); ExactPosition(33464); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(30749); ExactPosition(33464); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(33473); ExactPosition(37265); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(33473); ExactPosition(37265); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(37274); ExactPosition(38879); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(37274); ExactPosition(38879); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(38887); ExactPosition(39175); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(38887); ExactPosition(39175); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(39183); ExactPosition(41001); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(39183); ExactPosition(41001); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(41009); ExactPosition(41198); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(41009); ExactPosition(41198); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(41207); ExactPosition(41597); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(41207); ExactPosition(41597); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(41586); ExactPosition(41856); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(41586); ExactPosition(41856); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(41839); ExactPosition(42445); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(41839); ExactPosition(42445); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(42459); ExactPosition(44217); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(42459); ExactPosition(44217); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(44262); ExactPosition(44549); strand=1); type='repeat_region') |
| Sequence: ATGAGTTTAGTACAGTTAATAGATAGTACTGTAGGTTTACGTAATGAGTTAACACAACCTGACGGTGCATACCTTACAGGTTTAGGTGCTTCTACAGTTGGTGCCCTTCTTGATACTACAAGAAAGTTATCCTACTATGGTAATAACAGGCAGGCGCTTATTGACCTGTTGTTACATGCTAAGGTTACAGGGGGCCCCATTGATATTGATGTACCTGTACTTATCGATACACCTATTAACATGGACTTTGAGTACACACCCCTAATTATGAGTTGTTCATCTGGTAGATTACTATCAGATACCACTGCCTTAGTACTCAATCGCTTGGGTTACGGTTCCACTATTAATAACTTTGATATGTGGAATGTAACAGCACCTTGGGCTATTACTAGGTGGGGTAGTACTGGTGACTGGAATACATCTGAGGAAGCTGTTGCATCATTAAGACAGACAAACGACCCACATTACTACCAACCAACGGTTAACGATGCTGACGTATGGTCCGCGCTTACACCTGAGCAGCAGAACCAAAACATTAGCCCTAAACTTGAGGTACATAACTCAGACGGTGTTGTACTGAATACACCGAGAGGTAGGTACGCCCTGTATGAGTTTTATGGTTGTAATTACTGTCGTGTATTTAATCCTAACCTGTCTGGTGGTAAAGGTGTGTTGGGTACTATCGTATTTAATAATACTAACGCTACGGCTTATGGTATTGATAACTGGGTGGTAGGTGGTGATGATATTAGGAACGGGTCTTTCTCTGGGGTAGTGCACTTACGTAATAAGCGCGGAGGGGCGATTAATTGTAGTCCCTATCGTTCTGGTGAGTCGGGTATCAAAACATACCAGAACGAGCTAAATGGCGTATCCGCGCGCTGTTATGAGATGACGTACACCAACTGCCATGTTAAGCAGGCGTTATATGATGGTTTAGACTTAGCATCTGATTATGGTGCAGTGTCTGAGCGTGTTGCTGATTTATCATTAGCAGAAGCGCCGTGGCAGGAGCTACCAACAAAACACACTGTGATTGGTTGTTCTGGTTTTAATTGTGGTGGTAATGCTTTGCATATTGACGGTACAGGTAATACTGTTATAGGTATGAAAGCTAGTCTTAGTGGTTTATCCGGTGTACATGATGATGGTACACGTAGTGTGTACAATGATGTTGTGTCAGTAAACAACGCACGTAATAATATATCCCATCAGGTTACACTATCTAAGAGCCAAGTTATTAATGGTATTACGCTGGTACTAGACGCCGCTACAGGTACGAATTTCGGGTATGGTGTGTACGCTCCTTTATCTAACACTAAGGGTATGGACACCTCGTTAGTCGCGTCAGGGACTGTAATACCCTTCATAGTCAAGGCACAGACTACGGCTGATGGTGATTTAACAGTAGGGCACTCTGCGGCACCTGACCGTATTTGTCGTGTACTAGGTAATCCTGAGCTTGGTTTAACTAGTACTCCTATTATGGCTCTTACATCCCTCGCTACTGGTACACCATCCGCACCTTCTGGTAATGTGTATTTGAACTCACACTACCTAGGGTCTGAGGTTCCCGGTTTTCAGGTACTAGGAGTAAGTGGCGGAGGTGGTTTAGTGTCGACACTCAACAGTGCGTACGCTACACAGGTAGGTAACTCACAAGCCTCCTTTGTGTTTCACGGCTCATCCTTGAGTATTGTAGCGAGGGACGCCGCAGGCGTATTGCGGCAGTACGCACTCACTGGTGTGCCTGTGTAA |