| Protein Id: YP_009325291.1 |
Length: 667 aa |
| Description: tail spike protein Salmonella phage 103203_sal5. |
Molecule type: linear |
| Data category: PHG |
Date: 29-Jun-20 |
| Source: Salmonella phage 103203_sal5 |
| Class virus: phage |
Virus name: Salmonella phage |
| Host: Salmonella enterica |
Authors: Paradiso;R.; Riccardi;M.G.; Orsini;M.; Galiero;G. and Borriello;G. |
| Title: Complete Genome Sequences of eight Podoviridae Bacteriophages infecting several subspecies of Salmonella enterica |
Journal: Unpublished |
| Taxonomy: Salmonella phage 103203_sal5 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus. |
| db_xref: """taxon:1813779, CDD:370239, CDD:312676, GeneID:30310202""" |
| Sequence: MTDITANVVVSNPRPIFTESRSFKAVANGKIYIGQIDTDPVNPANQIPVYIENEDGSHVQITQPLIINAAGKIVYNGQLVKIVTVQGHSMAIYDANGSQVDYIANVLKYDPDQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQGLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL |
Nucleotide
| Nucleotide_Id: NC_031946.1 |
Length: 2004bp |
| Description: Salmonella Phage 103203_sal5; complete genome |
Source: Salmonella phage 103203_sal5 |
| Nucleotide_type: DNA |
Molecule type: linear |
| Data category: PHG |
Date: 29-Jun-20 |
| Class virus: phage |
Virus name: Salmonella phage |
| CDS: NC_031946.1:17348..19351 |
Host: Salmonella enterica |
| Authors: Paradiso;R.; Riccardi;M.G.; Orsini;M.; Galiero;G. and Borriello;G. |
Journal: Unpublished |
| Title: Complete Genome Sequences of eight Podoviridae Bacteriophages infecting several subspecies of Salmonella enterica |
db_xref: taxon:1813779; GeneID:30310241; GeneID:30310241; GeneID:30310182; GeneID:30310182; GeneID:30310183; GeneID:30310183; GeneID:30310184; GeneID:30310184; GeneID:30310185; GeneID:30310185; GeneID:30310186; GeneID:30310186; GeneID:30310187; GeneID:30310187; GeneID:30310188; GeneID:30310188; GeneID:30310189; GeneID:30310189; GeneID:30310190; GeneID:30310190; GeneID:30310191; GeneID:30310191; GeneID:30310192; GeneID:30310192; GeneID:30310193; GeneID:30310193; GeneID:30310194; GeneID:30310194; GeneID:30310195; GeneID:30310195; GeneID:30310196; GeneID:30310196; GeneID:30310197; GeneID:30310197; GeneID:30310198; GeneID:30310198; GeneID:30310199; GeneID:30310199; GeneID:30310200; GeneID:30310200; GeneID:30310201; GeneID:30310201; GeneID:30310202; GeneID:30310202; GeneID:30310203; GeneID:30310203; GeneID:30310204; GeneID:30310204; GeneID:30310205; GeneID:30310205; GeneID:30310206; GeneID:30310206; GeneID:30310207; GeneID:30310207; GeneID:30310208; GeneID:30310208; GeneID:30310209; GeneID:30310209; GeneID:30310210; GeneID:30310210; GeneID:30310211; GeneID:30310211; GeneID:30310212; GeneID:30310212; GeneID:30310213; GeneID:30310213; GeneID:30310214; GeneID:30310214; GeneID:30310215; GeneID:30310215; GeneID:30310216; GeneID:30310216; GeneID:30310217; GeneID:30310217; GeneID:30310218; GeneID:30310218; GeneID:30310219; GeneID:30310219; GeneID:30310220; GeneID:30310220; GeneID:30310221; GeneID:30310221; GeneID:30310222; GeneID:30310222; GeneID:30310223; GeneID:30310223; GeneID:30310224; GeneID:30310224; GeneID:30310225; GeneID:30310225; GeneID:30310226; GeneID:30310226; GeneID:30310227; GeneID:30310227; GeneID:30310228; GeneID:30310228; GeneID:30310229; GeneID:30310229; GeneID:30310230; GeneID:30310230; GeneID:30310231; GeneID:30310231; GeneID:30310232; GeneID:30310232; GeneID:30310233; GeneID:30310233; GeneID:30310234; GeneID:30310234; GeneID:30310235; GeneID:30310235; GeneID:30310236; GeneID:30310236; GeneID:30310237; GeneID:30310237; GeneID:30310238; GeneID:30310238; GeneID:30310239; GeneID:30310239; GeneID:30310240; GeneID:30310240 |
| Taxonomy: Salmonella phage 103203_sal5 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(40443); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(113); ExactPosition(470); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(113); ExactPosition(470); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(472); ExactPosition(877); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(472); ExactPosition(877); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(880); ExactPosition(1369); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(880); ExactPosition(1369); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(1346); ExactPosition(2846); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(1346); ExactPosition(2846); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(2845); ExactPosition(5023); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(2845); ExactPosition(5023); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(5036); ExactPosition(5948); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(5036); ExactPosition(5948); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(5947); ExactPosition(7240); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(5947); ExactPosition(7240); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(7278); ExactPosition(7488); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(7278); ExactPosition(7488); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(7471); ExactPosition(7972); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(7471); ExactPosition(7972); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(7952); ExactPosition(9350); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(7952); ExactPosition(9350); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(9353); ExactPosition(10055); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(9353); ExactPosition(10055); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(10054); ExactPosition(10510); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(10054); ExactPosition(10510); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(10512); ExactPosition(11202); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(10512); ExactPosition(11202); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(11212); ExactPosition(12628); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(11212); ExactPosition(12628); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(12627); ExactPosition(14457); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(12627); ExactPosition(14457); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(14479); ExactPosition(14962); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(14479); ExactPosition(14962); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(15004); ExactPosition(15370); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(15004); ExactPosition(15370); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(15383); ExactPosition(15578); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(15383); ExactPosition(15578); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(15662); ExactPosition(15914); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(15662); ExactPosition(15914); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(15941); ExactPosition(16166); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(15941); ExactPosition(16166); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(16234); ExactPosition(17137); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(16234); ExactPosition(17137); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(17347); ExactPosition(19351); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(17347); ExactPosition(19351); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(19409); ExactPosition(20867); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(19409); ExactPosition(20867); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(20856); ExactPosition(21789); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(20856); ExactPosition(21789); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(21785); ExactPosition(22148); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(21785); ExactPosition(22148); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(22496); ExactPosition(23660); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(22496); ExactPosition(23660); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(23889); ExactPosition(24171); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(23889); ExactPosition(24171); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(24308); ExactPosition(24845); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(24308); ExactPosition(24845); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(24837); ExactPosition(24978); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(24837); ExactPosition(24978); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(24981); ExactPosition(25170); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(24981); ExactPosition(25170); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25181); ExactPosition(25292); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25181); ExactPosition(25292); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25292); ExactPosition(25730); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25292); ExactPosition(25730); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25950); ExactPosition(26343); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25950); ExactPosition(26343); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(26510); ExactPosition(26933); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(26510); ExactPosition(26933); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(26982); ExactPosition(27690); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(26982); ExactPosition(27690); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27792); ExactPosition(27975); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(27792); ExactPosition(27975); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27971); ExactPosition(28142); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(27971); ExactPosition(28142); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28381); ExactPosition(28747); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(28381); ExactPosition(28747); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28890); ExactPosition(29469); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(28890); ExactPosition(29469); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(29489); ExactPosition(29873); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(29489); ExactPosition(29873); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(30204); ExactPosition(30408); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(30204); ExactPosition(30408); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(30446); ExactPosition(31676); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(30446); ExactPosition(31676); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(31659); ExactPosition(32319); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(31659); ExactPosition(32319); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(32392); ExactPosition(32632); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(32392); ExactPosition(32632); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(32765); ExactPosition(33056); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(32765); ExactPosition(33056); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(33076); ExactPosition(33238); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(33076); ExactPosition(33238); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(33224); ExactPosition(34046); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(33224); ExactPosition(34046); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(34042); ExactPosition(35419); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(34042); ExactPosition(35419); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(35491); ExactPosition(35698); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(35491); ExactPosition(35698); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(35712); ExactPosition(35910); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(35712); ExactPosition(35910); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(35906); ExactPosition(36434); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(35906); ExactPosition(36434); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(36658); ExactPosition(37096); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(36658); ExactPosition(37096); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(37405); ExactPosition(37753); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(37405); ExactPosition(37753); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(37745); ExactPosition(37922); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(37745); ExactPosition(37922); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(37914); ExactPosition(38184); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(37914); ExactPosition(38184); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(38183); ExactPosition(38474); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(38183); ExactPosition(38474); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(38470); ExactPosition(38866); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(38470); ExactPosition(38866); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(38862); ExactPosition(39432); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(38862); ExactPosition(39432); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(39612); ExactPosition(39792); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(39612); ExactPosition(39792); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(39788); ExactPosition(40307); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(39788); ExactPosition(40307); strand=1); type='CDS') |
| Sequence: ATGACAGACATCACTGCAAACGTAGTTGTTTCTAACCCTCGTCCAATCTTCACTGAATCCCGTTCGTTTAAAGCTGTTGCTAATGGGAAAATTTACATTGGTCAGATTGATACCGATCCGGTTAATCCTGCCAATCAGATACCCGTATACATTGAAAATGAGGATGGCTCTCACGTCCAGATTACTCAGCCGCTAATTATCAACGCAGCCGGTAAAATCGTATACAACGGCCAACTGGTGAAAATTGTCACCGTTCAGGGTCATAGCATGGCTATCTATGATGCCAATGGTTCTCAGGTTGACTATATTGCTAACGTATTGAAGTACGATCCAGATCAATATTCAATAGAAGCTGATAAAAAATTTAAGTATTCAGTAAAATTATCAGATTATCCAACATTGCAGGATGCAGCATCTGCTGCGGTTGATGGCCTTCTTATCGATCGAGATTATAATTTTTATGGTGGAGAGACAGTTGATTTTGGCGGAAAGGTTCTGACTATAGAATGTAAAGCTAAATTTATAGGAGATGGAAATCTTATTTTTACGAAATTAGGCAAAGGTTCCCGCATTGCCGGGGTTTTTATGGAAAGCACTACAACACCATGGGTTATCAAGCCTTGGACGGATGACAATCAGTGGCTAACGGATGCCGCAGCGGTCGTTGCCACTTTAAAACAATCTAAAACTGATGGGTATCAGCCAACCGTAAGCGATTACGTTAAATTCCCAGGAATAGAAACGTTACTCCCACCTAATGCAAAAGGGCAAAACATAACGTCTACGTTAGAAATTAGAGAATGTATAGGGGTCGAAGTTCATCGGGCTAGCGGTCTAATGGCTGGTTTTTTGTTTAGAGGGTGTCACTTCTGCAAGATGGTAGACGCCAATAATCCAAGCGGAGGTAAAGATGGCATTATAACCTTCGAAAACCTTAGCGGCGATTGGGGGAAGGGTAACTATGTCATTGGCGGACGAACCAGCTATGGGTCAGTAAGTAGCGCCCAGTTTTTACGTAATAATGGTGGCTTTGAACGTGATGGTGGAGTTATTGGGTTTACTTCATATCGCGCTGGGGAGAGTGGCGTTAAAACTTGGCAAGGTACTGTGGGCTCGACAACCTCTCGCAACTATAATCTGCAATTCCGCGACTCGGTCGTTATTTACCCCGTATGGGACGGATTCGATTTAGGTGCTGACACTGACATGAATCCGGAGTTGGACAGGCCAGGGGACTACCCTATAACCCAATACCCACTGCATCAGTTACCCCTAAATCACCTGATTGATAATCTTCTGGTTCGCGGGGCGTTAGGTGTAGGTTTTGGTATGGATGGTAAGGGCATGTATGTGTCTAATATTACCGTAGAAGATTGCGCTGGGTCTGGCGCGTACCTACTCACCCACGAATCAGTATTTACCAATATAGCCATAATTGACACCAATACTAAGGATTTCCAGGCGAATCAGATTTATATATCTGGGGCTTGCCGTGTGAACGGTTTACGTTTAATTGGGATCCGCTCAACCGATGGGCAGGGTCTAACCATAGACGCCCCTAACTCTACCGTAAGCGGTATAACCGGGATGGTAGACCCCTCTAGAATTAATGTTGCTAATTTGGCAGAAGAAGGGTTAGGTAATATCCGCGCTAATAGTTTCGGCTATGATAGCGCAGCGATTAAACTGCGGATTCATAAGTTATCAAAGACATTAGATAGCGGAGCATTGTACTCCCACATTAACGGGGGGGCCGGTTCTGGCTCAGCGTATACTCAACTTACTGCTATTTCAGGTAGCACACCTGACGCTGTATCATTAAAAGTTAACCACAAAGATTGCAGGGGGGCAGAGATACCATTTGTTCCTGACATCGCGTCAGATGATTTTATAAAGGATTCCTCATGTTTTTTGCCATATTGGGAAAATAATTCTACTTCTTTAAAGGCTTTAGTGAAAAAACCCAATGGAGAATTAGTTAGATTAACCTTGGCAACACTTTAG |