| Protein Id: YP_516200.1 |
Length: 296 aa |
| Description: putative phage tail spike protein Sodalis phage phiSG1. |
Molecule type: linear |
| Data category: PHG |
Date: 13-Aug-18 |
| Source: Sodalis phage phiSG1 |
| Class virus: phage |
Virus name: Sodalis phage |
| Host: -- |
Authors: Toh;H.; Weiss;B.L.; Perkin;S.A.; Yamashita;A.; Oshima;K.; Hattori;M. and Aksoy;S. |
| Title: Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host |
Journal: Genome Res 16 (2); 149-156 (2006) |
| Taxonomy: Sodalis phage phiSG1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
| db_xref: """taxon:373126, CDD:286143, GeneID:3964391""" |
| Sequence: MADITPNIVVSMPSQIFTQRREFKSCSNGKIYIGKIDTDPTIAENQIPVYLENEDGKYTRVAQPLIIGTGGYPVYNGQIAKFVTEEGHAMAVYDGDGVQQFYFPNVLKYEPKKAIKELYDALDTKFDKTGGTVNGSLHVTQALHVGGNDSGLRANGDGNVAFYAKNAKVAAWNQDKLHWLNDVEIDGMLKAKAATFGGNVTVSWGGRTATFHENGDVAGPIWGGALSGYLHNTFVTNMRLTGIAWTGNIGNGEHLWHNGGVIVGIQSTANYATNLRVAVRYLQKWVGGTWVGIVSD |
Nucleotide
| Nucleotide_Id: NC_007902.1 |
Length: 891bp |
| Description: Sodalis phage phiSG1; complete genome |
Source: Sodalis phage phiSG1 |
| Nucleotide_type: DNA |
Molecule type: circular |
| Data category: PHG |
Date: 13-Aug-18 |
| Class virus: phage |
Virus name: Sodalis phage |
| CDS: NC_007902.1:21687..22577 |
Host: -- |
| Authors: Toh;H.; Weiss;B.L.; Perkin;S.A.; Yamashita;A.; Oshima;K.; Hattori;M. and Aksoy;S. |
Journal: Genome Res 16 (2); 149-156 (2006) |
| Title: Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host |
db_xref: taxon:373126; GeneID:3964415; GeneID:3964415; GeneID:3964416; GeneID:3964416; GeneID:3964417; GeneID:3964417; GeneID:3964418; GeneID:3964418; GeneID:3964419; GeneID:3964419; GeneID:3964420; GeneID:3964420; GeneID:3964376; GeneID:3964376; GeneID:3964377; GeneID:3964377; GeneID:3964378; GeneID:3964378; GeneID:3964379; GeneID:3964379; GeneID:3964380; GeneID:3964380; GeneID:3964381; GeneID:3964381; GeneID:3964382; GeneID:3964382; GeneID:3964383; GeneID:3964383; GeneID:3964384; GeneID:3964384; GeneID:3964385; GeneID:3964385; GeneID:3964386; GeneID:3964386; GeneID:3964387; GeneID:3964387; GeneID:3964388; GeneID:3964388; GeneID:3964389; GeneID:3964389; GeneID:3964390; GeneID:3964390; GeneID:3964391; GeneID:3964391; GeneID:3964392; GeneID:3964392; GeneID:3964393; GeneID:3964393; GeneID:3964394; GeneID:3964394; GeneID:3964395; GeneID:3964395; GeneID:3964396; GeneID:3964396; GeneID:3964397; GeneID:3964397; GeneID:3964398; GeneID:3964398; GeneID:3964399; GeneID:3964399; GeneID:3964400; GeneID:3964400; GeneID:3964401; GeneID:3964401; GeneID:3964402; GeneID:3964402; GeneID:3964403; GeneID:3964403; GeneID:3964404; GeneID:3964404; GeneID:3964405; GeneID:3964405; GeneID:3964406; GeneID:3964406; GeneID:3964407; GeneID:3964407; GeneID:3964408; GeneID:3964408; GeneID:3964409; GeneID:3964409; GeneID:3964410; GeneID:3964410; GeneID:3964411; GeneID:3964411; GeneID:3964412; GeneID:3964412; GeneID:3964413; GeneID:3964413; GeneID:3964414; GeneID:3964414; GeneID:3964374; GeneID:3964374; GeneID:3964375; GeneID:3964375 |
| Taxonomy: Sodalis phage phiSG1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(52162); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(3); ExactPosition(2037); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(3); ExactPosition(2037); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(2509); ExactPosition(3121); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(2509); ExactPosition(3121); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(3523); ExactPosition(3934); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(3523); ExactPosition(3934); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(4778); ExactPosition(5018); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(4778); ExactPosition(5018); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(5527); ExactPosition(5881); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(5527); ExactPosition(5881); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(5850); ExactPosition(6282); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(5850); ExactPosition(6282); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(6278); ExactPosition(6746); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(6278); ExactPosition(6746); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(6724); ExactPosition(7780); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(6724); ExactPosition(7780); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(7932); ExactPosition(8658); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(7932); ExactPosition(8658); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(8641); ExactPosition(10069); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(8641); ExactPosition(10069); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(10072); ExactPosition(12193); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(10072); ExactPosition(12193); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(12206); ExactPosition(13076); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(12206); ExactPosition(13076); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(13087); ExactPosition(14359); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(13087); ExactPosition(14359); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(14385); ExactPosition(14550); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(14385); ExactPosition(14550); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(14653); ExactPosition(15154); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(14653); ExactPosition(15154); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(15113); ExactPosition(16532); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(15113); ExactPosition(16532); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(16531); ExactPosition(17065); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(16531); ExactPosition(17065); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(17061); ExactPosition(17532); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(17061); ExactPosition(17532); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(17515); ExactPosition(18187); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(17515); ExactPosition(18187); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(18197); ExactPosition(19475); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(18197); ExactPosition(19475); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(19471); ExactPosition(21646); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(19471); ExactPosition(21646); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(21686); ExactPosition(22577); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(21686); ExactPosition(22577); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(22588); ExactPosition(23152); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(22588); ExactPosition(23152); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(23148); ExactPosition(24153); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(23148); ExactPosition(24153); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25046); ExactPosition(26273); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25046); ExactPosition(26273); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(26269); ExactPosition(28165); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(26269); ExactPosition(28165); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28171); ExactPosition(28459); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(28171); ExactPosition(28459); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(30116); ExactPosition(30860); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(30116); ExactPosition(30860); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(31619); ExactPosition(32144); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(31619); ExactPosition(32144); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(32570); ExactPosition(32918); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(32570); ExactPosition(32918); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(32914); ExactPosition(33319); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(32914); ExactPosition(33319); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(33335); ExactPosition(33608); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(33335); ExactPosition(33608); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(33943); ExactPosition(34189); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(33943); ExactPosition(34189); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(34875); ExactPosition(35265); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(34875); ExactPosition(35265); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(35251); ExactPosition(35662); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(35251); ExactPosition(35662); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(35683); ExactPosition(36148); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(35683); ExactPosition(36148); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(36110); ExactPosition(37205); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(36110); ExactPosition(37205); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(37377); ExactPosition(38088); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(37377); ExactPosition(38088); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(39920); ExactPosition(40508); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(39920); ExactPosition(40508); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(40488); ExactPosition(40770); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(40488); ExactPosition(40770); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(42806); ExactPosition(43106); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(42806); ExactPosition(43106); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(43106); ExactPosition(44660); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(43106); ExactPosition(44660); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(47811); ExactPosition(48480); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(47811); ExactPosition(48480); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(48476); ExactPosition(48791); strand=-1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(48476); ExactPosition(48791); strand=-1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(49555); ExactPosition(50545); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(49555); ExactPosition(50545); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(50695); ExactPosition(51340); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(50695); ExactPosition(51340); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(51311); ExactPosition(51644); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(51311); ExactPosition(51644); strand=1); type='CDS') |
| Sequence: ATGGCTGATATTACGCCAAACATTGTCGTATCCATGCCGTCACAAATTTTCACCCAGCGCCGGGAATTTAAGTCCTGTAGCAACGGCAAAATTTACATCGGCAAAATCGACACCGACCCCACAATAGCTGAAAATCAAATACCCGTTTATCTGGAAAATGAAGACGGAAAATATACCCGAGTCGCCCAGCCACTTATCATCGGCACCGGCGGCTACCCGGTCTACAACGGGCAGATTGCCAAATTCGTCACTGAAGAAGGCCACGCTATGGCGGTGTATGACGGCGATGGCGTACAGCAGTTCTATTTCCCCAACGTGCTGAAATACGAGCCGAAGAAAGCAATAAAAGAACTGTATGACGCGCTAGACACGAAATTCGATAAAACTGGCGGCACCGTTAATGGCAGCCTGCATGTTACCCAGGCATTGCATGTTGGGGGTAATGACTCGGGGTTGCGCGCCAATGGCGACGGCAACGTGGCGTTTTATGCTAAAAATGCCAAGGTGGCAGCGTGGAATCAAGACAAGCTGCACTGGTTAAACGATGTCGAAATAGATGGCATGCTGAAGGCAAAAGCAGCGACATTTGGCGGCAATGTCACCGTCTCATGGGGCGGCAGAACTGCAACCTTTCACGAAAACGGAGATGTGGCGGGTCCCATTTGGGGCGGTGCATTGAGTGGCTATCTCCATAACACCTTCGTCACCAACATGCGTCTGACCGGCATCGCCTGGACGGGGAATATTGGCAATGGTGAACACCTCTGGCACAACGGCGGTGTTATCGTCGGCATTCAGTCAACAGCGAATTACGCCACCAACCTTCGCGTCGCCGTTCGCTACCTTCAAAAATGGGTGGGTGGCACTTGGGTAGGGATTGTTAGTGATTAA |